Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1715 ATGGTGAGGGGAAAGACTCAAATGAAGCGCATAGAGAATGCTACAAGCAGGCAAGTGACCTTTTCAAAGCGCAGAAATGGACTGCTCAAAAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGAACGGTATCAGAACAGAACCAAAGAGTTGATGCCCAGCAACAACCAAGCTTTAGAAGATGTGCAGTTGGAGAAAGAATTTGACTCCTTTAGCATGACCAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAACTGATGGGAGATGGCTTGGATTTGTGTTCCATTGAAGAGCTGCAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGTTTCAATTGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAGAATGCAGCACTGCAGATGAAGGTTGGAACTGAAAGATCAAAAAAAGCAGAAACCAAGCAGAGATCAGAATCAAACCACCAAGAGACTATGGATGTGGAAACTGAACTGTTCATAGGACCACCAGAAAGAAGAAGCAGCAATGGCTTCCAGTAG 645 41.09 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIERYQNRTKELMPSNNQALEDVQLEKEFDSFSMTKKLQHLEVCKRKLMGDGLDLCSIEELQQLERQIERSLSKIRSRKFQLLKEEIMKLKEEEKMLLEENAALQMKVGTERSKKAETKQRSESNHQETMDVETELFIGPPERRSSNGFQ 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37696684 37702882 + Maker00003019 Lcy12g1715 649778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1715 214 MobiDBLite consensus disorder prediction 174 194 - -
Lcy12g1715 214 MobiDBLite consensus disorder prediction 171 214 - -
Lcy12g1715 214 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy12g1715 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy12g1715 214 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Lcy12g1715 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 Pfam K-box region 96 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy12g1715 214 Coils Coil 122 142 - -
Lcy12g1715 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 Coils Coil 144 171 - -
Lcy12g1715 214 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy12g1715 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy12g1715 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1715 Lcy-Chr12:37696684 Lcy13g0612 Lcy-Chr13:8032163 8.33E-63 dispersed
Lcy11g1921 Lcy-Chr11:42931674 Lcy12g1715 Lcy-Chr12:37696684 1.72E-53 wgd
Lcy12g1715 Lcy-Chr12:37696684 Lcy6g0207 Lcy-Chr6:1858196 5.51E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19283 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1715 - - - 0.0