Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1718 ATGGCGTCCCAATCAACCCATCTCCTCGATCTCTACATCAGAGATTACACATTGAAGTCCCTCGACAACACGATCAAAACAGGGACTCTTCACAGCGTCCCATTGCCGGAAAATTTCTCCGGCATCAACGCCGACACGGCGAGGTTCCGATGCGGAAGTTTGCGGCGGTACGGCGCCAGAGTCAAGGAATTCCATCTGGGTGTCGGCGTTTCTCTGAACCCATGTGCAGAGAGAATCGTGATCATCCGGCAAAATTTGGGCTCGAATTGGTCTTCGATCTACTTCAACAACTACCATTTAACTGGCTACCAATTAGTCTCTTCGATTTTGGGACTTTTGGCTTACAATTCCGGCAGTGACAGCAATAGTTCAAGCTCCCCTGTTCCATTTGAGGTCGGAATTTCCGCCGGAGAAAAACCCATCACCATAGACTTCAGAAACTCGACGAGAATGGCGAAGATTTCGGGAATGAGGCCAATCTGCGCGAGCTTTGAGAGGGATGGGAGAGTGACACTGGCGAAAGAGATTTCGCCATTGATATGCTCTGTTTTGAGACAGGGGCATTTTGGTTTGGTGGTGGAGGAGCCAGAGCCGGTGGAGCTGAGGAAGAAGGAGCGGCCGTGGAAGGTGGCGGTCGGGAGCTCGATCGGAGCCGCGATCGGAGCGTTTCTGTTGGGGTTGCTTTTGGTGGCGATGTTTGTGAGAGTGAAGAAGAGGACGAGAATGGAGGAGCTGGAAATCAGGGCTTACGAAGAGGAAGCTCTGCAGGTTTCGATGGTCGGACATGTCAGAGCTCCGACGGCTCCGGGGACTCGGACTGTGCCGTCGATAGAACATGAGTATTTGCCTCCGGGGACTCGTCGACGATTTCCTCCTAGGGTTTTCGTCGATGCCGGACTTCAAATGATCTCTGGGCCTTTGGCCCTGGTGCGACTTAAGCCCGGTTTAAGAGTACGACTCTTGTCTCGTGCTGACCCATGTGTGACTTCCTCGTTATCAAAAGTGGCTGAAGGGCCTCTCTGTCACGCTGCTCTGAATGCGTGCCTGAGGGTTGGCTGCCTCGGCCTTGGCATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCTAACTTGCTCTGTTGTATCCATCCCGATGGTGCGTACACTCAGTCGGGAAAACTTGGGGAGGCCGGGGAAATACCCGAGCCTCTCTTCAAGTATTGTAGTCATCCCAGGGGTGCGTACACTCTTCCGGGAAAACTTGAGGAGGCTAAGGAAATTCCTGAGCCTCTCTTTCCTGACCTTGGACTTCTCGGGGGACAACCGCAATTAGACAACCCAAATGCTTTATTGCTTTTGCTGACTTTATGCTTTCTCAATTCTGCTTTCATAAATTCCGTTTTCTACCATGTAGTTCACCTTGGCCTTGGCATGAGGCGGACCCTCTGTCTTCGTTATCTGCTTGCTGGCTCCGTCGTTGGGCTTATACTTCGAATCGATCGGGCTTTGCTGAATGCTCGGCCTCGGCCTTGGCATGAGGGCGAGCATTTCGCTTGCATTGCCTGCCGATCCGTCCTACCGTGCTCATGTCAGGGGTGCATACCCCCTTCTGAGGAAAAACTTGGGGAGGCTGAGGAAATTCCCAGGCCTCTTTTCAAGCGTCTTGGAAACTCTTCTGGGGCAAGCTTGGGGAGGCTGAGGAAATTCCCAGGCCTCTCTTCAAGCGTCTTGGAATCATCCCAGGGGTGCGGGTGCGTACACTCTTCTGGGGCAAGCTTGGGGAGGCTGAGGAAATTCCCAGGCCTCTTTTCAAGCGTCTTGGAATCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAACTTGGGGAGACCTAG 1851 53.11 MASQSTHLLDLYIRDYTLKSLDNTIKTGTLHSVPLPENFSGINADTARFRCGSLRRYGARVKEFHLGVGVSLNPCAERIVIIRQNLGSNWSSIYFNNYHLTGYQLVSSILGLLAYNSGSDSNSSSSPVPFEVGISAGEKPITIDFRNSTRMAKISGMRPICASFERDGRVTLAKEISPLICSVLRQGHFGLVVEEPEPVELRKKERPWKVAVGSSIGAAIGAFLLGLLLVAMFVRVKKRTRMEELEIRAYEEEALQVSMVGHVRAPTAPGTRTVPSIEHEYLPPGTRRRFPPRVFVDAGLQMISGPLALVRLKPGLRVRLLSRADPCVTSSLSKVAEGPLCHAALNACLRVGCLGLGMRPSISSALLANLLCCIHPDGAYTQSGKLGEAGEIPEPLFKYCSHPRGAYTLPGKLEEAKEIPEPLFPDLGLLGGQPQLDNPNALLLLLTLCFLNSAFINSVFYHVVHLGLGMRRTLCLRYLLAGSVVGLILRIDRALLNARPRPWHEGEHFACIACRSVLPCSCQGCIPPSEEKLGEAEEIPRPLFKRLGNSSGASLGRLRKFPGLSSSVLESSQGCGCVHSSGASLGRLRKFPGLFSSVLESSQGCVHSSGEKLGET 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37753080 37759400 - Maker00003008 Lcy12g1718 649781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1718 616 PANTHER PROTEIN, PUTATIVE (DUF1191)-RELATED 3 282 IPR010605 GO:0016020(PANTHER)
Lcy12g1718 616 Pfam Protein of unknown function (DUF1191) 4 194 IPR010605 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1718 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0676 Lcy-Chr10:19737360 Lcy12g1718 Lcy-Chr12:37753080 1.22E-12 dispersed
Lcy12g1718 Lcy-Chr12:37753080 Lcy2g2300 Lcy-Chr2:48161295 3.96E-19 dispersed
Lcy12g1718 Lcy-Chr12:37753080 Lcy10g1491 Lcy-Chr10:39114287 4.08E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g426 . . . . . . . . . . Cma02g01497 . Car02g01259 Car15g01072 . . Cpe05g00293 . . . . . . . . . . . . . . . . . Cone19ag1460 . Csa05g00339 Chy09g01170 Cme07g01592 . . . . . . . . . Cmo02g01538 Cmo15g01248 . . . . . Cpe13g00189 Bhi12g00336 . . Lac11g2160 Hepe06g1600 . Lcy12g1718 Cla01g00319 Cam01g0329 Cec01g0321 Cco01g0338 Clacu01g0331 Cmu01g0315 Cre09g2196 Lsi09g00324 Csa04g00632 . Cme09g01703
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008782 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34