Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1719 ATGCCCAACAACAGGCTTAGCTTCGACGCAGAGGGCTCCCAGCTGGCCTCAGAATTTGGCACTAATGGCTTCTCTTTCACCCTTCAAATTGTCCTTGGTGGCATTAGTTTTGGCCATCTTCACCACATCAACGCTCGCCGTGTTCCGACCCAGCCCGTGGCAGCTCGCCCATGCCACGTTCTATGGCGACGAAACTGCCTCCGCCACCATGGGTATGGAATCATCGTAATAGGAGGAGCTTGTGGATATGGAAACTTGTTTACGAATGGCTATGGAACTGATACAGTGGCATTGAGCTCGACACTGTTCAACAATGGCTACGCCTGCGGAACTTGCTTTCAAATTAAATGCGTGCAGTCAAAGGCGTGCTATGCGAACGTGCCGTTCACCACGGTGACGGCGACCAACCTCTGCCCGCCGAATTGGTCGCAGGACTCCAACGCCGGCGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCCAAGCCTGCCTTCATGAAGATCGCTTTGTGGAAGGCCGGAATTGTCCCCGTCCAATACCGCAGGGTTCCATGTGTAAGAAAAGGAGGTGTTCGATTGAGCTTCCAAGGAAATGGTTACTGGTTATTAGTGTATGTGATGAACGTAGGAGGAGGAGGCGATGTGTACTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAACTGGGGAGCTTCATACCAAGCTTTTTCCTCGTTGGGTGGCCAATGCCTCTCTTTCAGAATCACTTCTTACACAACCAGAGAGACAATCACTCTTTGGAATGTCGTTCCTGCAAATTGGCAAGTCGGGTTGACTTACAATTCTAATCTCAACTTCCGTTGA 861 50.75 MPNNRLSFDAEGSQLASEFGTNGFSFTLQIVLGGISFGHLHHINARRVPTQPVAARPCHVLWRRNCLRHHGYGIIVIGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIALWKAGIVPVQYRRVPCVRKGGVRLSFQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQCLSFRITSYTTRETITLWNVVPANWQVGLTYNSNLNFR 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37764073 37766325 - Maker00003094 Lcy12g1719 649782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1719 286 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 191 IPR007112 -
Lcy12g1719 286 Gene3D - 191 286 IPR036749 -
Lcy12g1719 286 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Lcy12g1719 286 CDD DPBB_EXPA_N 78 186 - -
Lcy12g1719 286 PANTHER EXPANSIN-A15 76 281 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 Gene3D - 54 186 IPR036908 -
Lcy12g1719 286 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576(InterPro)
Lcy12g1719 286 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576(InterPro)
Lcy12g1719 286 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576(InterPro)
Lcy12g1719 286 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576(InterPro)
Lcy12g1719 286 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Lcy12g1719 286 SMART dpbb_1 95 181 IPR007112 -
Lcy12g1719 286 Pfam Lytic transglycolase 95 181 IPR009009 -
Lcy12g1719 286 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Lcy12g1719 286 SUPERFAMILY PHL pollen allergen 188 281 IPR036749 -
Lcy12g1719 286 PRINTS Expansin signature 130 140 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 PRINTS Expansin signature 166 179 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 PRINTS Expansin signature 90 104 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 PRINTS Expansin signature 267 283 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 PRINTS Expansin signature 190 202 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 PRINTS Expansin signature 149 166 IPR002963 GO:0009664(InterPro)
Lcy12g1719 286 SUPERFAMILY Barwin-like endoglucanases 76 209 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1719 Lcy-Chr12:37764073 Lcy8g1801 Lcy-Chr8:44424220 9.77E-83 dispersed
Lcy12g1719 Lcy-Chr12:37764073 Lcy6g2003 Lcy-Chr6:42665910 1.30E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1719 - - - 0.0