Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1726 ATGATTGTTTTGCCTTCTCTTTTTCTCCTTCTCTTGCTCGACATTCGTGGCGGTGGGGCTCAAGTAACTGAGCTTCCCCTTCGCCCCGTGTTGAGCAACCTTCAAACTTACATTGTCCATGTGAAGAAACCAGAGACGAGAGCCAACAGACAGACTGACGACGATCTAGAGAACTGGCATAAGTCGTTCTTACCGACGAGTTCGGAGAGCTCGGAGGAGCGTCCGGAGTTGCTATATTCGTATCGGAATGTGATGAGTGGTTTTGCTGCAAGACTTAGTGAAGAACAAGTGAAGGCTATGGAAGAGAAGGATGGTTTTGTCTCTGCAAGGCGTGAAAGGATATTGCATTTGCATACAACTCACACCCCGGATTTTCTAGGATTGAATCGGCAATTTGGGTTTTGGAAAGACTCCAACTTTGGAAAGGGAGTGATCATAGGAGTGTTGGATGGCGGAATTACGCCGAGCCATCCTTCATTTGATGATGCGGGGATGCCGCCGCCGCCAGCCAAATGGAAAGGAAGATGCGAGTTTAATTTCTCAGCATGTAACAACAAGCTTATAGGTGCGAGATCTTTCAATCTCGCAGCAAAAGCCTTAAAGGGAGAGACAACCATGGATGACTCTCCTATTGATGAGGATGGCCATGGAACTCACACGGCCAGCACCGCCGCCGGTACTTTCGTCGATGGTGCCGACGCATTGGCAAATGCCAAAGGCACAGCCGTCGGCATGGCACCTTTGGCTCACCTTGCCATTTACAAAGTCTGCTTTGGAGAAGATTGCTCCGATAGCGACATTCTCGCAGCGCTCGACGCCGCTGTTGAAGATGGCGTCGACGTGCTCTCGCTCTCCCTCGGAGGCGAATCGCTTCCATTCTTTGCAGACGACATCGCGGTCGGCGCATTTGCAGCGATTCAAAAGGGGATTTTTGTGAGTTGCTCAGCTGCTAATGCAGGCCCTTTTAATGCCACATTGTCCAACGAAGCGCCGTGGATTCTAACAGTTGCAGCAAGCACCATTGATCGAAGAATCGTGGCCGCCGCTAAGCTTGGAAATGGAGAAGAATTTGACGGCGAATCTCTCTTCCAGCCAAGTGATTTCCCACCAACATTCTTGCCTCTTGTTTACGCTGGTGAGAAGAATCAAACGGCTGCTCTGTGCGGAGAAGGATCATTGAAAGACATCGACGTAAAGGGAAAAGCTGTGGTTTGCGAGAGAGGAGGAGGAATTGCAAGAATTGCAAAAGGGGTTGAAGTGAAAAACGCCGGCGGCGCCGCCATGATCCTCCTCAACCAAGAACAAGATGGATTTAGCACCCAAGCCGACGCTCACGTTCTTCCGGCAACCCACGTCAGCCACGCGGCGGCGCTGAAGATCAAAGCCTACATAAACTCAACAACAAACCCAACAGCCACAATTTTATTCAAAGGAACCGTCATCGGCGACGACTTCTCTCCAGCCATAGCTTCTTTCTCATCTCGAGGTCCCAGCCTCGCAAGCCCCGGCATCTTGAAACCCGACATAACCGGTCCCGGTGTCAGCATTTTAGCTGCATGGCCATTCCCATTAGACAACAACACGAACACGAAATCAACATTCAACATAATTTCAGGAACATCGATGTCGTGTCCTCATCTCAGCGGCATTGCAGCTCTGATCAAAAGCTCCCATCCCGATTGGTCACCGGCCGCCATTAAATCCGCCATAATGACAACGGCCAATATAACAAATATTGAAGGCCAGCCGATTCCCGATCAAAATTTGCAACCGGCGGACTTGTTTGCAATTGGCGCAGGCCATGTCAACCCATCAAAAGCAGCCGATCCAGGATTGGTTTACGATATTCAACCCGATGATTATATTCCTTATCTCTGTGGATTGGGATACAAAAATAACGAAGTTGGAATTATTGCACATAAACCAATCGATTGTTTAGCGAAACCGAGCATTCCAGAAGGAGAGCTCAACTACCCATCATTCACGGTCGCCTTAGGACCGCCGCAGACATTCACAAGAACAGTGACGAATGTCGGCGGTGGATATGAAGTTTATGCCGCCGTCGTTGAAGCGCCGCCGAGTGTTTCTGTTACAGTCCGGCCAAGGAAGATATTCTTCTCGATGATGAACCAAAAAGTGACGTATTCGGTGACGTTCAAGCGGATTGGTTCGGTCAGTCCTCCAATTGAGTTTGCTCAAGGCTATCTTAAATGGGTTTCTGCTAAACACGTCGTTAGGAGTCCGATCTCTGTTAAGTTCGTATGA 2265 49.45 MIVLPSLFLLLLLDIRGGGAQVTELPLRPVLSNLQTYIVHVKKPETRANRQTDDDLENWHKSFLPTSSESSEERPELLYSYRNVMSGFAARLSEEQVKAMEEKDGFVSARRERILHLHTTHTPDFLGLNRQFGFWKDSNFGKGVIIGVLDGGITPSHPSFDDAGMPPPPAKWKGRCEFNFSACNNKLIGARSFNLAAKALKGETTMDDSPIDEDGHGTHTASTAAGTFVDGADALANAKGTAVGMAPLAHLAIYKVCFGEDCSDSDILAALDAAVEDGVDVLSLSLGGESLPFFADDIAVGAFAAIQKGIFVSCSAANAGPFNATLSNEAPWILTVAASTIDRRIVAAAKLGNGEEFDGESLFQPSDFPPTFLPLVYAGEKNQTAALCGEGSLKDIDVKGKAVVCERGGGIARIAKGVEVKNAGGAAMILLNQEQDGFSTQADAHVLPATHVSHAAALKIKAYINSTTNPTATILFKGTVIGDDFSPAIASFSSRGPSLASPGILKPDITGPGVSILAAWPFPLDNNTNTKSTFNIISGTSMSCPHLSGIAALIKSSHPDWSPAAIKSAIMTTANITNIEGQPIPDQNLQPADLFAIGAGHVNPSKAADPGLVYDIQPDDYIPYLCGLGYKNNEVGIIAHKPIDCLAKPSIPEGELNYPSFTVALGPPQTFTRTVTNVGGGYEVYAAVVEAPPSVSVTVRPRKIFFSMMNQKVTYSVTFKRIGSVSPPIEFAQGYLKWVSAKHVVRSPISVKFV 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37985057 37987321 - Maker00003072 Lcy12g1726 649789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1726 754 CDD PA_subtilisin_like 350 474 - -
Lcy12g1726 754 Gene3D - 342 482 - -
Lcy12g1726 754 SUPERFAMILY Subtilisin-like 117 612 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g1726 754 Pfam Fibronectin type-III domain 655 751 IPR041469 -
Lcy12g1726 754 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 36 749 IPR045051 -
Lcy12g1726 754 PRINTS Subtilisin serine protease family (S8) signature 538 554 IPR015500 -
Lcy12g1726 754 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Lcy12g1726 754 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Lcy12g1726 754 FunFam Subtilisin-like protease SBT1.5 143 365 - -
Lcy12g1726 754 Gene3D Peptidase S8/S53 domain 143 621 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g1726 754 Gene3D - 625 753 - -
Lcy12g1726 754 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 30 118 IPR037045 -
Lcy12g1726 754 ProSiteProfiles Serine proteases, subtilase domain profile. 125 608 - -
Lcy12g1726 754 CDD Peptidases_S8_3 115 575 IPR034197 -
Lcy12g1726 754 Pfam PA domain 373 460 IPR003137 -
Lcy12g1726 754 Pfam Subtilase family 141 586 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy12g1726 754 FunFam subtilisin-like protease SBT1.5 342 481 - -
Lcy12g1726 754 Pfam Peptidase inhibitor I9 36 118 IPR010259 -
Lcy12g1726 754 SUPERFAMILY PA domain 360 438 IPR046450 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1726 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1726 Lcy-Chr12:37985057 Lcy7g1232 Lcy-Chr7:15267859 1.24E-212 dispersed
Lcy12g1726 Lcy-Chr12:37985057 Lcy12g1729 Lcy-Chr12:38013485 0 proximal
Lcy12g1726 Lcy-Chr12:37985057 Lcy13g1622 Lcy-Chr13:35170538 6.97E-119 wgd
Lcy12g1726 Lcy-Chr12:37985057 Lcy6g0219 Lcy-Chr6:2004756 5.02E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62