Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1729 ATGGTCATTCTTCCTTTCTTTTGTATCTTTTTCTTGCTCAACGTTCATGGCAATATCGCCATCAAACTACAAACCTACATTGTCCATGTGGAGCAGCCGGAGCTCGGAATTTCGGGTGACAAAATTGATCTAGAAAGTTGGTACACATCATTCTTATCGGAGACGACGATCACGACATCATCGAACGAGAAATCGCGCTTACTTTATTCGTATCGAAATGTGATGAGTGGTTTTTCTGCAAGACTTACAGAAGAACAAGTTAAAGCCATGGAAGAGAAGGATGGCTTCATCTCAGCCAGGCCTGAAAGCATATTGAATTTGCACACAACTTATACTCCTAAATACTTGGGGTTGAACGAACAATTTGGATTGTGGAAAGATTCAAACTTCGGAAAGGGAGTGATCATTGGAGTGTTGGATACTGGAATTACTCCGGCTCATCCATCGTTTCACGACGATGGAATGCCATTGCCACCAGCTAAATGGAAAGGAAGATGTGAAGAAGAAGAAGAATTTGGTGCTTCAATCTGTAATAAGAAGCTGATCGGCGCAAGGACTTTCAATCGTGCCAGTAGCGCGATACAATCGCCAATTGATGACGATGGACACGGCACACACACGGCCAGCACGGCTGCTGGCGCTTTTGTTGAAGGAGCTCAAGCATTGGGGAACGCAAGAGGCAAGGCCGCTGGCATGGCGCCTTTAGCTCACATTGCAATGTATAAAGTTTGCTCTCCAAAGGGTTGCTCGAGCAGCGATATCCTAGCGGCATTAGACGCCGCTATAGACGACGGCGTCGACGTGCTCTCGCTCTCGCTCGGCGGCCGTTCGATTCCATTTTTCTTGGACAACATTGCAATAGGCTCATTTGCAGCCATTCAAAAGGGAATTTTTGTTAGCTGTTCAGCTGGAAATTCAGGCCCTTCCGAAAGTACATTATCCAACGACGCGCCTTGGATTCTAACGGTTGGAGCAAGCGATACCGATCGAACGATTGTGGCATTGGCGAAGCTTGGAAACGGTGAGGTCCATTTCGGCGAGTCTCTCTACCAGCCGAGAGATTTCCCATCAACATACTTGCCATTGGTTTACGCCGGCAGCAGTGGAACAAAAGGGTCTGAATTTTGCGTTCAAGGCTCACTTTCAAACATGAATGTGAGAGGAAAAGTTGTGGTGTGCGAACGTGGAGGAGGAATAGGCAGAATTGCGAAAGGGATGGTCGTGAAAAATGCTGGCGGGGCTGCCATGATTGTAATAAACCAACAGCCAGATGGGTTCAGCACTGCAGCCGAAGCTCACGTTCTTCCAGCGACCCACGTAAGCTACACGGCTGGACTTAGGATCAAATCATACATAAGTTCATCACAAAACCCAATAGCGTCGATTTCGTTTGAAGGAACTGTAATTGGAGACAACAATTTCTCTCCCGCCATGGCTTCTTTCTCTTCTCGAGGTCCCAGCCGGATCAGCCCCGGAATCTTGAAACCCGACATAACAGGCCCTGGAGTCAACATTCTCGCAGCATGGCCATTCCCATTAGACAACAACACCGACACAAAATCAACATTCAACGTTATCTCAGGAACATCCATGTCGTGTCCTCATCTCAGCGGCATTGCAGCTCTCGTCAAAAGCACTCATCCGAATTGGTCGCCCGCCGCCATTAAATCCGCCATCATGACATCTTCAGACATAACGAATCCTCGAGGAAAGTCAATCGTGGATCAAGATTTGAAACCTGCGAACTTCTTTGCAATGGGTGCCGGACACGTCAACCCATCGAGAGCAGCTGACCCAGGATTGGTTTACGACATTCAACCCGATGATTACATTCCTTATCTCTGCGGTCTGTACGCAGATGCCCAAGTTGCAACTATAGTTCATAAACTTGTAACATGCTCGACGGTGACGAGAATTCGGGAAGGGGATCTGAATTATCCTTCGTTCGCCGTCACGTTGGGAGCGTCACAGACGTCCAAGCGAACTGTGACGAATGTGGGTGATGCAATGTCAAATTATTCGCTCGTTGTGAAGGCGCCGCTTGGAGTTTCTGTGACGGTTACACCGAGAACTTTGAACTTCTCGAGGGTGAATGAAAAGGTGACGTATTCGGTGAGTTTCAGTCGAGATATTTTGGTTATAACGCCGAGTGAGTTCAGTGAAGGGTATCTCGTATGGGTTTCTGACAAACACTTCGTGAGGAGTCCGATCTCTGTGAAGTTCGAGTAA 2229 47.69 MVILPFFCIFFLLNVHGNIAIKLQTYIVHVEQPELGISGDKIDLESWYTSFLSETTITTSSNEKSRLLYSYRNVMSGFSARLTEEQVKAMEEKDGFISARPESILNLHTTYTPKYLGLNEQFGLWKDSNFGKGVIIGVLDTGITPAHPSFHDDGMPLPPAKWKGRCEEEEEFGASICNKKLIGARTFNRASSAIQSPIDDDGHGTHTASTAAGAFVEGAQALGNARGKAAGMAPLAHIAMYKVCSPKGCSSSDILAALDAAIDDGVDVLSLSLGGRSIPFFLDNIAIGSFAAIQKGIFVSCSAGNSGPSESTLSNDAPWILTVGASDTDRTIVALAKLGNGEVHFGESLYQPRDFPSTYLPLVYAGSSGTKGSEFCVQGSLSNMNVRGKVVVCERGGGIGRIAKGMVVKNAGGAAMIVINQQPDGFSTAAEAHVLPATHVSYTAGLRIKSYISSSQNPIASISFEGTVIGDNNFSPAMASFSSRGPSRISPGILKPDITGPGVNILAAWPFPLDNNTDTKSTFNVISGTSMSCPHLSGIAALVKSTHPNWSPAAIKSAIMTSSDITNPRGKSIVDQDLKPANFFAMGAGHVNPSRAADPGLVYDIQPDDYIPYLCGLYADAQVATIVHKLVTCSTVTRIREGDLNYPSFAVTLGASQTSKRTVTNVGDAMSNYSLVVKAPLGVSVTVTPRTLNFSRVNEKVTYSVSFSRDILVITPSEFSEGYLVWVSDKHFVRSPISVKFE 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38013485 38015713 + Maker00003093 Lcy12g1729 649792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1729 742 SUPERFAMILY Subtilisin-like 107 601 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g1729 742 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 136 147 IPR023827 -
Lcy12g1729 742 SUPERFAMILY PA domain 360 452 IPR046450 -
Lcy12g1729 742 CDD Peptidases_S8_3 105 564 IPR034197 -
Lcy12g1729 742 Gene3D Peptidase S8/S53 domain 133 610 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy12g1729 742 CDD PA_subtilisin_like 337 462 - -
Lcy12g1729 742 FunFam subtilisin-like protease SBT1.5 329 469 - -
Lcy12g1729 742 Pfam Peptidase inhibitor I9 25 108 IPR010259 -
Lcy12g1729 742 Pfam Fibronectin type-III domain 643 739 IPR041469 -
Lcy12g1729 742 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 108 IPR037045 -
Lcy12g1729 742 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 25 737 IPR045051 -
Lcy12g1729 742 Pfam Subtilase family 131 570 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy12g1729 742 ProSiteProfiles Serine proteases, subtilase domain profile. 110 597 - -
Lcy12g1729 742 Pfam PA domain 360 448 IPR003137 -
Lcy12g1729 742 Gene3D - 614 741 - -
Lcy12g1729 742 FunFam Subtilisin-like protease SBT1.5 133 339 - -
Lcy12g1729 742 Gene3D - 329 469 - -
Lcy12g1729 742 PRINTS Subtilisin serine protease family (S8) signature 199 212 IPR015500 -
Lcy12g1729 742 PRINTS Subtilisin serine protease family (S8) signature 131 150 IPR015500 -
Lcy12g1729 742 PRINTS Subtilisin serine protease family (S8) signature 527 543 IPR015500 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1729 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1729 Lcy-Chr12:38013485 Lcy7g1234 Lcy-Chr7:15321455 4.34E-221 dispersed
Lcy12g1726 Lcy-Chr12:37985057 Lcy12g1729 Lcy-Chr12:38013485 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00348 Chy09g01158 . . . . . . . . . . . . . . . . . . Bhi12g00346 . . . . . Lcy12g1729 . . . . . . . Lsi09g00345 . . Cme09g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62