Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1735 ATGGCCAACCTTACATGGAAACGATTTCAGGTTTTAATTCTAGCGAGCACAGATATAACTACATCAACAGTGCAATGGGCAATGGCTTATCTTCTGCAGAATCCAAAAGTTATGTCAAAAGCTAAAGAAGAACTTGTACAAGTGATCGGAAAAGGGAATCCAATTGAGGAATCACACATCAACAAACTTCCATTTTTACAAGCAATCGTCAAAGAAACCTTACGACTGCAATCTCCTCTTCTTCTTCCTCGTCGAGCCGAAGCAGAAGCCACCATTGAAGGCTTCACAATTCCGAAGGGAACCCAAGTAATCATAAATATGTGGGCTTTAGGCAGAGACCCAAATGTTTGGGAAAACCCAGATTCGTTCATGCCTGAAAGGTTCTTGGATTGTGCAACTTCTGATATCAAAGGTCGAAACTTTGAGTTCATTCCGTTTGGCAGTGGGCGGAGGACTTGCCCTGGACAGCCATTGGCGACCAGGATGCTGCACTTGATTGTGGGTTCGTTGGTTCATTGGTTTGATTGGAAGCTTGAAGATGGAGTTACGCCACAGAATTTGAACATGGATGATAAATTTGGTCTTACTGTGGAGAAGGCTCACCCTTTACGAGCTGTGCCTCTTATTACATGA 633 43.44 MANLTWKRFQVLILASTDITTSTVQWAMAYLLQNPKVMSKAKEELVQVIGKGNPIEESHINKLPFLQAIVKETLRLQSPLLLPRRAEAEATIEGFTIPKGTQVIINMWALGRDPNVWENPDSFMPERFLDCATSDIKGRNFEFIPFGSGRRTCPGQPLATRMLHLIVGSLVHWFDWKLEDGVTPQNLNMDDKFGLTVEKAHPLRAVPLIT 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38100194 38100826 - Maker00003081 Lcy12g1735 649798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1735 210 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 146 155 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy12g1735 210 SUPERFAMILY Cytochrome P450 11 205 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 11 208 - -
Lcy12g1735 210 Pfam Cytochrome P450 11 196 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 Gene3D Cytochrome P450 6 205 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS P450 superfamily signature 144 153 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS P450 superfamily signature 68 79 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS P450 superfamily signature 153 164 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS P450 superfamily signature 15 32 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS E-class P450 group I signature 106 130 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS E-class P450 group I signature 153 176 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS E-class P450 group I signature 143 153 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS E-class P450 group I signature 24 50 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 PRINTS E-class P450 group I signature 67 85 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1735 210 FunFam Predicted protein 13 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1735 Lcy-Chr12:38100194 Lcy12g1728 Lcy-Chr12:37997692 2.01E-87 dispersed
Lcy12g1734 Lcy-Chr12:38094452 Lcy12g1735 Lcy-Chr12:38100194 2.01E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1735 - - - 0.0