Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1741 ATGACCCAGACCCGATTCTTTCGGACCCGGAATTCCAAATCCAACGAAGAAGCAGAACCCACCCCAAGCGGCGGCGGAGGGGCCGCCATGAGAGTCATAGTGCCTCTGCAAGGCGTCGTTCAAGGAAGTGGCGGCGTCGTATTGGGCTCTGTTATACCTTGCGTTCTCTTCTACTTTCTGCAGCTCTACTTGAAACGAAACCGGTCCGACCCGAACCGGGACCCTCCGCACTCGCCGGAGGTGGATTCTCCGGGGAACTCCTCTACGCCGTCGAGTAATCAGTTAATGGAGCTTTCCATTCTGCCTCGAACGTTGTCTCGGACCTTCCTCTCGCCCAGGTCGAGCGGGAATATTTGCGTTTCGGGCCGGGCTAATTCGATTGCTAGAGTTGGGGATTCTTCGATTTTCGTTGGAATGAGGAGGTTCTTGGAGGACCCATATGATGAATTGGATAATCCGACGGGGATTATTCAGCTTTCTGTTGCTGAGAACAAGTTATCCTCGGACTTGGTGCAAAATTGGCTAATGGAGAATGGAAGGGATGCTATATTAGGAGGAGGGAATCATAACGAGCTGAGTGTAGCTGGGACTGTTAGCTACCAACCTTCAGATGGATTGATGGATTTGAAACTGGCTGTGGCAAGTTTCATGTCTCAAGTGTTAGGGAACTCCGTTTCGTTCATCCCATCACAATTAGTATTTACGACCGGAGTGACCTCTGCAATCGAAACTCTTTGCTTTTGCATAGCAGACCCGGGGCATGCGTTTCTTGTTCCCACACCATACTACCCTGGTCTTGACAATGATGTAAAATGGCGAACTGGGGTGGAGATAGTACCCGTTCCCTGTCGCAGTGCCGATAACTTCAGTTTAAGCATAACTTCTCTGGATCGAGCATTCCACCAGGCAAGGAGTCGTGGCCTTAAAGTTCGTGGAATTATAATCTCAAATCCCTCAGTGCCTGTTGGAAATCAACTACATAGAGAAACACTCTACAACCTTCTGGACTTTGCCAGGGAGAAAAACATCCATATAATATCAAATGAAATATTTGTGGGGTCAACATATGGAAGTGAAGAGTTCGTGAGCATGGCCGAAATGATCGATTTAGAAGATAGCGACCGAGACAGGGTACATATTACATATGGCCTATCTGAAGACATGTCACTTCCTGGTTTTAGAGTTGCTGCAATCTACAGTTTGAATGAAAATATCCTGGCTGCTGCTAGAAAACTGGCAAGGTTCTCATCTGTTTCTGCCATAACCCAGAACCTCCTTTCTTCTATGCTTTCAGATACGCAGTTTATTCAGAGGTTCATTCGGCTCAATAGAGAGAGGCTCGGAGAAATGAATGGAAAATTTGTTGCAGGGCTGAAGGAACTCGACATCAAATGCATGAGAAGCAATGGAGGTTTCTACTGCTGGGCAGACATGGGCAAGTTAAGCCGCTCTTACAGCGAGAAAGGTGAACTTGAGCTCTGGGATAAGTTGTTGGACATAGGTAAAGTTAATGTTATCCCTGGCTCTTGCTGTAATTGTATCGAACCGGGATGGTTCGGATTCTGTTTTACAACTTTAATTGATAAAGAAATTCCTATTGTTATGGACCGAATTCGGAGAATTTCCGAAGCTTGTAAATCTTATACTTGA 1650 46.61 MTQTRFFRTRNSKSNEEAEPTPSGGGGAAMRVIVPLQGVVQGSGGVVLGSVIPCVLFYFLQLYLKRNRSDPNRDPPHSPEVDSPGNSSTPSSNQLMELSILPRTLSRTFLSPRSSGNICVSGRANSIARVGDSSIFVGMRRFLEDPYDELDNPTGIIQLSVAENKLSSDLVQNWLMENGRDAILGGGNHNELSVAGTVSYQPSDGLMDLKLAVASFMSQVLGNSVSFIPSQLVFTTGVTSAIETLCFCIADPGHAFLVPTPYYPGLDNDVKWRTGVEIVPVPCRSADNFSLSITSLDRAFHQARSRGLKVRGIIISNPSVPVGNQLHRETLYNLLDFAREKNIHIISNEIFVGSTYGSEEFVSMAEMIDLEDSDRDRVHITYGLSEDMSLPGFRVAAIYSLNENILAAARKLARFSSVSAITQNLLSSMLSDTQFIQRFIRLNRERLGEMNGKFVAGLKELDIKCMRSNGGFYCWADMGKLSRSYSEKGELELWDKLLDIGKVNVIPGSCCNCIEPGWFGFCFTTLIDKEIPIVMDRIRRISEACKSYT 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38171164 38174291 + Maker00003102 Lcy12g1741 649804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1741 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 251 - -
Lcy12g1741 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 409 432 - -
Lcy12g1741 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 159 185 - -
Lcy12g1741 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 377 401 - -
Lcy12g1741 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 343 366 - -
Lcy12g1741 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 307 331 - -
Lcy12g1741 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 274 - -
Lcy12g1741 549 Gene3D Aspartate Aminotransferase, domain 1 145 537 IPR015422 -
Lcy12g1741 549 MobiDBLite consensus disorder prediction 70 93 - -
Lcy12g1741 549 CDD AAT_like 195 540 - -
Lcy12g1741 549 MobiDBLite consensus disorder prediction 1 27 - -
Lcy12g1741 549 Pfam Aminotransferase class I and II 158 538 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Lcy12g1741 549 Gene3D - 179 432 IPR015421 -
Lcy12g1741 549 SUPERFAMILY PLP-dependent transferases 132 541 IPR015424 -
Lcy12g1741 549 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 136 542 IPR050478 GO:0004069(PANTHER)|GO:0006520(PANTHER)|GO:0008483(PANTHER)|GO:0008793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1741 K14270 - - csv:101208573 988.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1741 Lcy-Chr12:38171164 Lcy1g0883 Lcy-Chr1:7647647 4.01E-122 dispersed
Lcy12g1741 Lcy-Chr12:38171164 Lcy6g0228 Lcy-Chr6:2058933 4.92E-215 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g453 . . . . . . . . . . . Cma15g01179 . Car15g01067 . . . . . . . . . . . . . . . . . . . . . . Csa05g00357 Chy09g01150 . Blo03g00382 . . . . Bpe11g00697 . . . . Cmo15g01239 . . . . . Cpe13g00195 Bhi12g00353 . . Lac11g2187 Hepe06g1617 . Lcy12g1741 Cla01g00335 Cam01g0348 Cec01g0344 Cco01g0356 Clacu01g0352 Cmu01g0332 Cre09g2178 Lsi09g00361 . . Cme09g01682
Vvi16g513 . . . Bda07g01835 Bpe03g00099 . . Bma14g02107 . Cmo18g01218 . Cma15g01179 . Car15g01067 Sed01g3949 . . Bhi01g01257 Tan01g0340 Cmetu06g0541 . Hepe07g0221 Mch10g0223 . Cla01g00335 Cam01g0348 Cec01g0344 Cco01g0356 Clacu01g0352 Cmu01g0332 Cre09g2178 Cone1ag1108 Cone5ag0817 . . . Csa05g00357 Chy09g01150 Cme06g00927 Blo07g00461 Blo09g00131 . . . . . . . . Cmo15g01239 . Cma18g01197 . Car18g01106 Cpe09g00132 Cpe13g00195 Bhi12g00353 . . Lac11g2187 Hepe06g1617 . Lcy12g1741 Cla05g00816 Cam05g0899 Cec05g0903 Cco05g0908 Clacu05g0890 Cmu05g0846 Cre05g0932 . Csa03g01642 Chy06g00879 Cme09g01682
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002106 1 2 3 1 2 2 2 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 2 2 1 64