Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1743 ATGAAAAGTGCTGATCCGGTGATGGAAACGATCGAACGGCTGAAAATTGGAGTGCAATGTAGATATGGCGTATTGTATGATTGCACCGACATGGAAACAAGGGGGCGCCGTGGAAATAATGATAAACAAGGGGTAGCTTGCAGAATTGTTGCTTTCGATCCTCTGTTGGCTTTTAAGATGGATGTTTTCGTTCTGCGTGCTCCTTCGAAAACCATGGGTTCGGAACAGAACGATGGCACAAGCTACCAGCCATCGGAGCCGAAGCTCTGCGTGAACAACTGCGGCTTCTTTGGTTCGGCCGGTACTGAGAATCTCTGCTCGAAGTGCTACAGAGACTCTCGAATCAAAGCAGAGCAAGCTGCTTCGGCAAAAGCAGCGATGGAGAAATCCCTTCAGTCCAAAATTCTAAAGCCGTCTGAAGGTAATTCTTCGGTCGTCTTCTCCGATTCTCCAGTGGATTTAGCTTCGTCGTCGTCCACTGGAATTTCCCACGGCAGTTCCAACAAATCACCGTTGCCGGATATTCCAAACCGGTGCCGGACCTGCAATAAGAAGGTGGGATTGATGGGATTCAAGTGCAAGTGCGAGCTGACCTTCTGTGGGACTCACCGGTACCCAGAAAGGCACGATTGCTTTTATGACTTCAAAAGTATTGGGCGAGAGGAGATCGCCATGGCCAATCCTGTGGTGAAGGCCGACAAGGTCGAGAGGTTCTGA 717 49.79 MKSADPVMETIERLKIGVQCRYGVLYDCTDMETRGRRGNNDKQGVACRIVAFDPLLAFKMDVFVLRAPSKTMGSEQNDGTSYQPSEPKLCVNNCGFFGSAGTENLCSKCYRDSRIKAEQAASAKAAMEKSLQSKILKPSEGNSSVVFSDSPVDLASSSSTGISHGSSNKSPLPDIPNRCRTCNKKVGLMGFKCKCELTFCGTHRYPERHDCFYDFKSIGREEIAMANPVVKADKVERF 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38184070 38186319 + Maker00003035 Lcy12g1743 649806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1743 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 89 131 - -
Lcy12g1743 238 Pfam A20-like zinc finger 89 111 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy12g1743 238 ProSiteProfiles Zinc finger A20-type profile. 84 118 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy12g1743 238 Gene3D - 154 234 IPR035896 -
Lcy12g1743 238 SUPERFAMILY AN1-like Zinc finger 168 233 IPR035896 -
Lcy12g1743 238 SMART A20_3 87 111 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy12g1743 238 PANTHER AN1-TYPE ZINC FINGER PROTEIN 85 237 IPR050652 GO:0043161(PANTHER)
Lcy12g1743 238 SMART AN1_Zf_4 179 216 IPR000058 GO:0008270(InterPro)
Lcy12g1743 238 Gene3D - 72 135 - -
Lcy12g1743 238 ProSiteProfiles Zinc finger AN1-type profile. 173 219 IPR000058 GO:0008270(InterPro)
Lcy12g1743 238 FunFam Zinc finger AN1-type containing 6 154 234 - -
Lcy12g1743 238 Pfam AN1-like Zinc finger 180 214 IPR000058 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1743 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1743 Lcy-Chr12:38184070 Lcy3g1923 Lcy-Chr3:46432411 7.76E-44 dispersed
Lcy1g1256 Lcy-Chr1:11895814 Lcy12g1743 Lcy-Chr12:38184070 5.53E-50 transposed
Lcy8g1998 Lcy-Chr8:46262538 Lcy12g1743 Lcy-Chr12:38184070 9.11E-44 transposed
Lcy12g1743 Lcy-Chr12:38184070 Lcy6g0231 Lcy-Chr6:2076279 4.04E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0728 . Csa05g00359 . . . . . . . . . . . . . . . . . . Cpe13g00197 Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 Lsi09g00363 . . .
Vvi16g510 . . . . . . . . . . . Cma15g01177 . Car15g01065 . . . . . . . . . . Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 . . . . Lsi05g01302 Csa05g00359 Chy09g01148 Cme06g00925 . . . . . . . . . . Cmo15g01238 . . . Car18g01105 Cpe09g00133 . Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla05g00813 Cam05g0896 . Cco05g0904 Clacu05g0887 Cmu05g0843 Cre05g0929 . Csa03g01639 . Cme09g01680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39