Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1744 GTTTTTAGGAATTCAGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGTGGCTAGAGGCAGTAGGGACCAAACGGAGGCGACCGAGCTCGGCCTCGGCCTCTGCCCAAGGCCAAGGCCGAGCAGGGGGTCGGGCCAAAAGCCCGATTCCTTTGACTTTGGCCTGACCCTTTGGCCTGTTCTTCCTTCGAGTTCCGTTTCCTGGCTGTCTCCTTGGGTTGGTATCGTGTTGTCTTCATCAGTTCCTCGCAAATCGGAGTCCACTGTCGAGCTTGAATTCGTAGAGCGAAGCAAAGCAAAAAGAAAGCTAAACTACGCCATTCTTCAATGTCCTGCTAAACCCATTTTCCCAAACCTTCTGTCCCTCCTTGCAATGGCCGCTTCTGGGGGTACTAGTTATAGAAATGGCGCCACTTCTCGAAACTCTCTTAAGTTCGATAAACCCTTTTCCGCTAATTCCAACCCCAAGTCTTCTATTAAGTCTAAGTCTCTTCCCAATTCTGCTCTTCGGCGTAGCAGCCCTGCCTCTCTCGGTGCTGCCAAGGATGATGGTGGAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGGTTGCGACCACGCAATTCAGAAGAATCGATAGCTGATGCTGATTTTGCTGATTGTGTAGAATTACAGCCAGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTATGAGTTCGATGAAGTGCTAACCGAGTTTGCATCTCAAAAACGTGTTTATGAAGTTGTGGCGAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGCACCGGTAAAACATATACTCTTGGAAGACTTGGAGAGGAAGACACTGCTGATCGTGGAATAATGGTGCGTGCTATGGAGGACATCTTGGCTGAAGTTTCTTTGGAGACGGATTCTGTCTCAGTATCCTACCTGCAGCTTTATATGGAGAGCATACAGGACCTTCTTGACCCTGCAAATGATAACATTTCCATCGTCGAAGATCCTAAAACTGGTGATGTGTCACTACCTGGGGCTACCCTTGTAGAAATTAGACACCAGGAGAGCTTTGTGGAACTCCTAAGATTGGGGGAAGCTCATCGGTTTGCTGCCAATACAAAATTAAACACCGAATCTTCTCGTAGTCATGCAATTCTCATGGTACATGTAAAGCGGTCTTTGAAAGGAAGGGATTCAACTCTATCAAGTGATATTGGTGGGAATTCTCATTTGGTTAAGACCTTGAAACCTCCTATTGTTCGGAAGGGAAAGTTAGTGGTGGTGGATCTTGCTGGTTCTGAGCGTATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGTGCATTAGGCAAGTGCATAAATGCCCTTGCTGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTTACAAGATTGCTCCGGGATTCATTTGGGGGAACTGCAAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGTCATCGTGGAGAGACTACAAGTACAATAACGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGTTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGGTTAGACATCCAATTAGACAAACTGATTGCAGAACATGAAAGGCAGCAAAAAGCATTTGAGAATGAAATTGAAAGGATTACCAAAGAAGCACAGGACCGCATATCTGAGGCTGAAAGAAGTCATTCAAATGCCCTGGAGAAGGAAAGGCTGAAATATCAGAGGGATTACATGGAATCAATCAAGAAGCTTGAAGATCAGATGATGGTAAACCAAAAGAAGCTTGGTGGGGAGAAAGTAATTAAGGAAGAAGTTGCTGCTTCTGCTTCTAGTATAATTGCTAATGGAGAGGGTTCAACAGCTTCTGCTGACAAGGAAATTGCAGAGCTAAAGAAGTTGGTTAAAAAGGAAACACTCTCGAGGAAGGCAGCCGAAGAGGAAGTTAGCAATCTTAGGAGTCAAGTAGCACAACTGAAGAGATCAGAGACGTCTTGCAATTCAGAGATCTCAAAGCTTCGCAAGACTCTGGAAGACGAGCAAAATCAGAAAAAGAAACTAGAAGGAGATATAGCTATACTGCAAAGCCAGTTGTTACAATTGAGCTTTGAAGCAGATGAGACCAGTAGGCGACTGGACAGAGGTGAGCCAGGGAAAGTCCTCGGTTCTCTAGATTCTCTTGTTCAACAAGTTAAGCATTCACAGGCTCAGGAGCCTGCGAATGGGGAGAAGGCTTCAGTAGCCAAACTCTTTGAGCAAGTGGGACTGCAGAAGATCTTGTCATTGCTTGAAGCTGAAGATTATGACGTCAGAATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAGACAAATCAGCAAAAGATTGTTGAGGCTGGGGGCCTTTCATCTTTGCTGATGCTACTCAGAAGCACTGAGGATGAGACAATACACAGAGTAGCTGCAGGGGCCATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTCATTATGTCTCAAGGAGGCATTAGCTTACTGGCCATGACTGCTGCCAATGCTGAGGATCCCCAAACTCTTCGTATGGTTGCCGGAGCAATCGCCAATTTGTGTGGCAATGATAAGTTGCAGATGAAGCTAAGGGGCGAAGGCGGTATTAAGGCATTACTTGGTATGGTTAGATGCAGACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCAAATTTCGCAAAGTGCGAGTCAAGGGCGTCTACACAAGGGACCAAGGCTGGAAAGTCTTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCCACGATCAAACGACATATCGAACTTGCACTCTGTCATTTAGCACAACATGAAGTGAATGCAAAAGACATGATCAGTGGAGGTGCCCTGTGGGAACTAGTTCGGATATCGCGAGACTGTTCACGAGAAGACATAAGGACTCTTGCGCATCGAACGCTAATATCCAGTCCAACATTTCAGGGTGAAATGAGACGATTACGAATAGATTATTGA 3123 45.34 VFRNSEAFRDKPGGTGVARGSRDQTEATELGLGLCPRPRPSRGSGQKPDSFDFGLTLWPVLPSSSVSWLSPWVGIVLSSSVPRKSESTVELEFVERSKAKRKLNYAILQCPAKPIFPNLLSLLAMAASGGTSYRNGATSRNSLKFDKPFSANSNPKSSIKSKSLPNSALRRSSPASLGAAKDDGGVPGRVRVAVRLRPRNSEESIADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILAEVSLETDSVSVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSLPGATLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLSSDIGGNSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTITFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKAFENEIERITKEAQDRISEAERSHSNALEKERLKYQRDYMESIKKLEDQMMVNQKKLGGEKVIKEEVAASASSIIANGEGSTASADKEIAELKKLVKKETLSRKAAEEEVSNLRSQVAQLKRSETSCNSEISKLRKTLEDEQNQKKKLEGDIAILQSQLLQLSFEADETSRRLDRGEPGKVLGSLDSLVQQVKHSQAQEPANGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLAMTAANAEDPQTLRMVAGAIANLCGNDKLQMKLRGEGGIKALLGMVRCRHPDVLAQVARGIANFAKCESRASTQGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLISSPTFQGEMRRLRIDY 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38194662 38207706 + Maker00003054 Lcy12g1744 649807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1744 1040 Pfam Armadillo/beta-catenin-like repeat 815 852 IPR000225 GO:0005515(InterPro)
Lcy12g1744 1040 PRINTS Kinesin heavy chain signature 482 503 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1744 1040 PRINTS Kinesin heavy chain signature 265 286 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1744 1040 PRINTS Kinesin heavy chain signature 433 451 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1744 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 568 IPR027417 -
Lcy12g1744 1040 MobiDBLite consensus disorder prediction 1 48 - -
Lcy12g1744 1040 Coils Coil 698 725 - -
Lcy12g1744 1040 Coils Coil 555 597 - -
Lcy12g1744 1040 Gene3D Kinesin motor domain 182 562 IPR036961 -
Lcy12g1744 1040 MobiDBLite consensus disorder prediction 144 184 - -
Lcy12g1744 1040 SUPERFAMILY ARM repeat 771 1023 IPR016024 -
Lcy12g1744 1040 Pfam Kinesin motor domain 195 532 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1744 1040 CDD KISc 189 530 - -
Lcy12g1744 1040 ProSitePatterns Kinesin motor domain signature. 432 443 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Lcy12g1744 1040 Gene3D - 750 872 IPR011989 -
Lcy12g1744 1040 SMART kinesin_4 187 540 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1744 1040 SMART arm_5 812 853 IPR000225 GO:0005515(InterPro)
Lcy12g1744 1040 SMART arm_5 896 936 IPR000225 GO:0005515(InterPro)
Lcy12g1744 1040 SMART arm_5 772 811 IPR000225 GO:0005515(InterPro)
Lcy12g1744 1040 SMART arm_5 854 895 IPR000225 GO:0005515(InterPro)
Lcy12g1744 1040 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 782 824 IPR000225 GO:0005515(InterPro)
Lcy12g1744 1040 FunFam Kinesin-like protein 752 1028 - -
Lcy12g1744 1040 FunFam Kinesin-like protein 181 562 - -
Lcy12g1744 1040 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 823 866 IPR000225 GO:0005515(InterPro)
Lcy12g1744 1040 Gene3D - 873 1026 IPR011989 -
Lcy12g1744 1040 ProSiteProfiles Kinesin motor domain profile. 189 532 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Lcy12g1744 1040 PANTHER KINESIN-LIKE PROTEIN KIF11 188 1007 IPR047149 GO:0005876(PANTHER)|GO:0008574(PANTHER)|GO:0051231(PANTHER)|GO:0072686(PANTHER)|GO:0090307(PANTHER)
Lcy12g1744 1040 Coils Coil 656 690 - -
Lcy12g1744 1040 MobiDBLite consensus disorder prediction 144 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1744 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1332 Lcy-Chr10:36209738 Lcy12g1744 Lcy-Chr12:38194662 6.78E-20 dispersed
Lcy12g1744 Lcy-Chr12:38194662 Lcy1g1423 Lcy-Chr1:13783792 1.86E-53 dispersed
Lcy10g1738 Lcy-Chr10:41747636 Lcy12g1744 Lcy-Chr12:38194662 1.39E-201 transposed
Lcy3g0945 Lcy-Chr3:32890612 Lcy12g1744 Lcy-Chr12:38194662 8.02E-17 transposed
Lcy11g1904 Lcy-Chr11:42751773 Lcy12g1744 Lcy-Chr12:38194662 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80