Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g1745 | ATGGATGCCCACTCCCTTCCCCCTCCCTTTCACACCCGCGATTTCCATCTCCAACAACACCAATTCCACCACTCCAACAATTCCGAAGAGGAGCACAGCGCCACCACCACCCGTCTCAAACGAGATCGTGACGACGACGACCTCAACAACCCCAACTCCGCCCCCAACAGCGCCGGAGACCCCCCCTCCGCCGACGGTGAGATTACTCGACGACCCAGAGGCCGCCCTGCCGGATCCAAGAACAAGCCCAAGCCACCCATTATTATCACTCGCGACAGTGCCAACGCCCTTCGGACTCATGTCATCGAAGTCACCGACGGCTGCGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGCGTATGCATTATGAGCGGCACCGGCACCGTCACCAACGTCACCCTCCGCCAGCCTGCCTCCCCTGGTGCAATTGTCAACTTACACGGCCGCTTCGAGATCTTATCCCTCGCTGGCTCCTTCCTCCCTCCGCCGGCCCCTCCGGCTGCCACCAGCTTGACCATTTACCTCGCCGGCGGTCAGGGTCAGGTCGTCGGCGGTAGCGTCGTCGGTACTTTGATCGCTTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTACGAACGCCTCCCGTTGGAGGACGACGACCAGCCGCCGATGCCGCCGCTCCAGGGCGGCGGCGGAATTGGGTCTCCCGATGAAGTTGGACAGTCCCAACCGCCGCAAACGGTGCACCATCAACAGCAGCAACAACAGCAGCAACTTCTCGCCGACGGAAATGGGCCATTATTCCACGGTTTGCCTCCGAATCTTTTAAACTCAATTCAAATGCCGCCGTCGGAAGCAGCTTATTGGGCTAATGCTCGACCGCCGTACTAA | 900 | 61.33 | MDAHSLPPPFHTRDFHLQQHQFHHSNNSEEEHSATTTRLKRDRDDDDLNNPNSAPNSAGDPPSADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTVHHQQQQQQQQLLADGNGPLFHGLPPNLLNSIQMPPSEAAYWANARPPY | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 38211174 | 38212073 | - | Maker00003060 | Lcy12g1745 | 649808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g1745 | 299 | FunFam | AT-hook motif nuclear-localized protein | 97 | 224 | - | - | |
Lcy12g1745 | 299 | CDD | DUF296 | 98 | 165 | IPR005175 | - | |
Lcy12g1745 | 299 | ProSiteProfiles | PPC domain profile profile. | 94 | 230 | IPR005175 | - | |
Lcy12g1745 | 299 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 29 | 299 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER) | |
Lcy12g1745 | 299 | Gene3D | - | 97 | 224 | - | - | |
Lcy12g1745 | 299 | MobiDBLite | consensus disorder prediction | 16 | 49 | - | - | |
Lcy12g1745 | 299 | PIRSF | ESCAROLA | 11 | 299 | IPR014476 | GO:0003680(InterPro) | |
Lcy12g1745 | 299 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 98 | 210 | IPR005175 | - | |
Lcy12g1745 | 299 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 94 | 226 | - | - | |
Lcy12g1745 | 299 | MobiDBLite | consensus disorder prediction | 242 | 265 | - | - | |
Lcy12g1745 | 299 | MobiDBLite | consensus disorder prediction | 218 | 279 | - | - | |
Lcy12g1745 | 299 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1856 | Lcy-Chr11:42349531 | Lcy12g1745 | Lcy-Chr12:38211174 | 3.86E-84 | dispersed | |
Lcy12g1745 | Lcy-Chr12:38211174 | Lcy13g0601 | Lcy-Chr13:7835251 | 4.45E-89 | dispersed | |
Lcy12g1745 | Lcy-Chr12:38211174 | Lcy12g1748 | Lcy-Chr12:38272087 | 1.56E-06 | proximal | |
Lcy2g0394 | Lcy-Chr2:3300818 | Lcy12g1745 | Lcy-Chr12:38211174 | 5.02E-76 | transposed | |
Lcy11g1898 | Lcy-Chr11:42676493 | Lcy12g1745 | Lcy-Chr12:38211174 | 1.08E-23 | wgd | |
Lcy12g1745 | Lcy-Chr12:38211174 | Lcy2g1283 | Lcy-Chr2:13856490 | 3.57E-41 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g1745 | - | - | - | 0.0 |