Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1745 ATGGATGCCCACTCCCTTCCCCCTCCCTTTCACACCCGCGATTTCCATCTCCAACAACACCAATTCCACCACTCCAACAATTCCGAAGAGGAGCACAGCGCCACCACCACCCGTCTCAAACGAGATCGTGACGACGACGACCTCAACAACCCCAACTCCGCCCCCAACAGCGCCGGAGACCCCCCCTCCGCCGACGGTGAGATTACTCGACGACCCAGAGGCCGCCCTGCCGGATCCAAGAACAAGCCCAAGCCACCCATTATTATCACTCGCGACAGTGCCAACGCCCTTCGGACTCATGTCATCGAAGTCACCGACGGCTGCGACATCGTCGACAGCGTCGCCACCTTCGCCCGCCGCCGCCAGCGCGGCGTATGCATTATGAGCGGCACCGGCACCGTCACCAACGTCACCCTCCGCCAGCCTGCCTCCCCTGGTGCAATTGTCAACTTACACGGCCGCTTCGAGATCTTATCCCTCGCTGGCTCCTTCCTCCCTCCGCCGGCCCCTCCGGCTGCCACCAGCTTGACCATTTACCTCGCCGGCGGTCAGGGTCAGGTCGTCGGCGGTAGCGTCGTCGGTACTTTGATCGCTTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTACGAACGCCTCCCGTTGGAGGACGACGACCAGCCGCCGATGCCGCCGCTCCAGGGCGGCGGCGGAATTGGGTCTCCCGATGAAGTTGGACAGTCCCAACCGCCGCAAACGGTGCACCATCAACAGCAGCAACAACAGCAGCAACTTCTCGCCGACGGAAATGGGCCATTATTCCACGGTTTGCCTCCGAATCTTTTAAACTCAATTCAAATGCCGCCGTCGGAAGCAGCTTATTGGGCTAATGCTCGACCGCCGTACTAA 900 61.33 MDAHSLPPPFHTRDFHLQQHQFHHSNNSEEEHSATTTRLKRDRDDDDLNNPNSAPNSAGDPPSADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTVHHQQQQQQQQLLADGNGPLFHGLPPNLLNSIQMPPSEAAYWANARPPY 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38211174 38212073 - Maker00003060 Lcy12g1745 649808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1745 299 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Lcy12g1745 299 CDD DUF296 98 165 IPR005175 -
Lcy12g1745 299 ProSiteProfiles PPC domain profile profile. 94 230 IPR005175 -
Lcy12g1745 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 299 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lcy12g1745 299 Gene3D - 97 224 - -
Lcy12g1745 299 MobiDBLite consensus disorder prediction 16 49 - -
Lcy12g1745 299 PIRSF ESCAROLA 11 299 IPR014476 GO:0003680(InterPro)
Lcy12g1745 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Lcy12g1745 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 226 - -
Lcy12g1745 299 MobiDBLite consensus disorder prediction 242 265 - -
Lcy12g1745 299 MobiDBLite consensus disorder prediction 218 279 - -
Lcy12g1745 299 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1856 Lcy-Chr11:42349531 Lcy12g1745 Lcy-Chr12:38211174 3.86E-84 dispersed
Lcy12g1745 Lcy-Chr12:38211174 Lcy13g0601 Lcy-Chr13:7835251 4.45E-89 dispersed
Lcy12g1745 Lcy-Chr12:38211174 Lcy12g1748 Lcy-Chr12:38272087 1.56E-06 proximal
Lcy2g0394 Lcy-Chr2:3300818 Lcy12g1745 Lcy-Chr12:38211174 5.02E-76 transposed
Lcy11g1898 Lcy-Chr11:42676493 Lcy12g1745 Lcy-Chr12:38211174 1.08E-23 wgd
Lcy12g1745 Lcy-Chr12:38211174 Lcy2g1283 Lcy-Chr2:13856490 3.57E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1745 - - - 0.0