Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g1748 | ATGGAGGGAAGAGATGGTGGCGCAAGTAGTGGGGTGACTGTGGTGGGATCAGATGCTCCGTCGGAGTACCAAATAGCTCCGAGAACCGCCGATAACCCGCCACAGACCGCTGGATCAACGCCGCCGTCGACGACCCAACCAGCTTCGACGCCGTCGGCCTCGGCTCCGCCGCCCACGGCGGCCTCCACAGTTCCAGGAAAGAAGAAAAGAGGGCGGCCGAGAAAATATGGACCCGATGGCTCTGTCTCTGTGGCTCTGTCTCCGAAGCCGATATCGTCCTCCGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAGGGGGAAGGTACGGCCGGCGAGCGCCGTGAGCAAAAGCAAGTTTGAAGTGGATAATTTAGGTGACTGGGTTCCATGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAATACGGGCGAGGATGTCACGATGAAGATAATATCCTTTTCTCAACAAGGGCCTCGAGCGATATGCATTTTGTCTGCGAACGGTGTGATCTCAAGTGTCACTCTCCGTCAGCCTGACTCCTCTGGAGGAACACTAACATATGAGTTTTCGATAATTTTCTGTCTCTTGGCTCTTGTTAGCATGCTTTTAGGATCCACCTTTCCAGTTCTGAACATTACCTTCCTAACATTGCACTTGGACGTCGACATATATTCTACTGTTCCCGTCTTGCTCGGTCGCTTTGAAATACTGTCCTTGTCTGGCTCATTCATGCCCAGTGATAATGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGTGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCTAAAAAGCCAAAACAAGACACTAATTCGACAGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGATCCTAAGTCCAACCTCTCGCCTTCCAGTTCCTTTCGTGGCGATAACTGGTCGATGCTGCCAAACGATTCAAGGAATAAGCCAACTGATATCAATGTATCCCTGCCCAGTGCATGA | 1101 | 51.23 | MEGRDGGASSGVTVVGSDAPSEYQIAPRTADNPPQTAGSTPPSTTQPASTPSASAPPPTAASTVPGKKKRGRPRKYGPDGSVSVALSPKPISSSVPPPVIDFSTEKRGKVRPASAVSKSKFEVDNLGDWVPCSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEFSIIFCLLALVSMLLGSTFPVLNITFLTLHLDVDIYSTVPVLLGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTNSTAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVSLPSA | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 38272087 | 38276044 | + | Maker00003065 | Lcy12g1748 | 649811 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g1748 | 366 | CDD | DUF296 | 139 | 273 | IPR005175 | - | |
Lcy12g1748 | 366 | Gene3D | - | 140 | 312 | - | - | |
Lcy12g1748 | 366 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 137 | 300 | - | - | |
Lcy12g1748 | 366 | ProSiteProfiles | PPC domain profile profile. | 135 | 319 | IPR005175 | - | |
Lcy12g1748 | 366 | MobiDBLite | consensus disorder prediction | 28 | 59 | - | - | |
Lcy12g1748 | 366 | MobiDBLite | consensus disorder prediction | 330 | 366 | - | - | |
Lcy12g1748 | 366 | MobiDBLite | consensus disorder prediction | 298 | 366 | - | - | |
Lcy12g1748 | 366 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 32 | 345 | IPR039605 | GO:0003680(InterPro) | |
Lcy12g1748 | 366 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
Lcy12g1748 | 366 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 140 | 296 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1898 | Lcy-Chr11:42676493 | Lcy12g1748 | Lcy-Chr12:38272087 | 1.54E-104 | dispersed | |
Lcy12g1748 | Lcy-Chr12:38272087 | Lcy6g2037 | Lcy-Chr6:43325648 | 1.50E-125 | dispersed | |
Lcy12g1745 | Lcy-Chr12:38211174 | Lcy12g1748 | Lcy-Chr12:38272087 | 1.56E-06 | proximal | |
Lcy12g1748 | Lcy-Chr12:38272087 | Lcy6g0240 | Lcy-Chr6:2114577 | 1.42E-67 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g1748 | - | - | - | 0.0 |