Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1748 ATGGAGGGAAGAGATGGTGGCGCAAGTAGTGGGGTGACTGTGGTGGGATCAGATGCTCCGTCGGAGTACCAAATAGCTCCGAGAACCGCCGATAACCCGCCACAGACCGCTGGATCAACGCCGCCGTCGACGACCCAACCAGCTTCGACGCCGTCGGCCTCGGCTCCGCCGCCCACGGCGGCCTCCACAGTTCCAGGAAAGAAGAAAAGAGGGCGGCCGAGAAAATATGGACCCGATGGCTCTGTCTCTGTGGCTCTGTCTCCGAAGCCGATATCGTCCTCCGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAGGGGGAAGGTACGGCCGGCGAGCGCCGTGAGCAAAAGCAAGTTTGAAGTGGATAATTTAGGTGACTGGGTTCCATGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAATACGGGCGAGGATGTCACGATGAAGATAATATCCTTTTCTCAACAAGGGCCTCGAGCGATATGCATTTTGTCTGCGAACGGTGTGATCTCAAGTGTCACTCTCCGTCAGCCTGACTCCTCTGGAGGAACACTAACATATGAGTTTTCGATAATTTTCTGTCTCTTGGCTCTTGTTAGCATGCTTTTAGGATCCACCTTTCCAGTTCTGAACATTACCTTCCTAACATTGCACTTGGACGTCGACATATATTCTACTGTTCCCGTCTTGCTCGGTCGCTTTGAAATACTGTCCTTGTCTGGCTCATTCATGCCCAGTGATAATGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGTGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCTAAAAAGCCAAAACAAGACACTAATTCGACAGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGATCCTAAGTCCAACCTCTCGCCTTCCAGTTCCTTTCGTGGCGATAACTGGTCGATGCTGCCAAACGATTCAAGGAATAAGCCAACTGATATCAATGTATCCCTGCCCAGTGCATGA 1101 51.23 MEGRDGGASSGVTVVGSDAPSEYQIAPRTADNPPQTAGSTPPSTTQPASTPSASAPPPTAASTVPGKKKRGRPRKYGPDGSVSVALSPKPISSSVPPPVIDFSTEKRGKVRPASAVSKSKFEVDNLGDWVPCSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEFSIIFCLLALVSMLLGSTFPVLNITFLTLHLDVDIYSTVPVLLGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTNSTAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVSLPSA 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38272087 38276044 + Maker00003065 Lcy12g1748 649811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1748 366 CDD DUF296 139 273 IPR005175 -
Lcy12g1748 366 Gene3D - 140 312 - -
Lcy12g1748 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 300 - -
Lcy12g1748 366 ProSiteProfiles PPC domain profile profile. 135 319 IPR005175 -
Lcy12g1748 366 MobiDBLite consensus disorder prediction 28 59 - -
Lcy12g1748 366 MobiDBLite consensus disorder prediction 330 366 - -
Lcy12g1748 366 MobiDBLite consensus disorder prediction 298 366 - -
Lcy12g1748 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 345 IPR039605 GO:0003680(InterPro)
Lcy12g1748 366 MobiDBLite consensus disorder prediction 1 99 - -
Lcy12g1748 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 296 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1898 Lcy-Chr11:42676493 Lcy12g1748 Lcy-Chr12:38272087 1.54E-104 dispersed
Lcy12g1748 Lcy-Chr12:38272087 Lcy6g2037 Lcy-Chr6:43325648 1.50E-125 dispersed
Lcy12g1745 Lcy-Chr12:38211174 Lcy12g1748 Lcy-Chr12:38272087 1.56E-06 proximal
Lcy12g1748 Lcy-Chr12:38272087 Lcy6g0240 Lcy-Chr6:2114577 1.42E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1748 - - - 0.0