Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1768 ATGGAACCCACCTCCGATTCTCTTCAAAGCCTCAAAAATTCCGTCAATTTCTTGTTCCCACGGCGGTGGATTCACTTCGCCGATCACCAATCCCGTTTCCTCTTCACCTTCTTCGCCGGTCTACTCATTTTCCTCTACATCAAACTCCGGCGGCGGCGCCTGCCACTGCCACCGGGTCCCCCCGGCGTTCCGCTGCTCGGAAACCTCCCGTTTCTCGACCCCGAACTTCACACCTACTTCGCCGAACTGGGCCGGAAATACGGCCCGATTGTGAAGCTTCAGCTTGGCAAAAAGATCGGCATAATCGTCAGCTCACCCTCCGTGGCACGAGAGGTGTTAAAAGACCACGATGTCACGTTCGCCAATCGCGACGTTCCTCAGGCCGGCAGAGCCGCCTCGTACGGCGGTTCCGACATAGTTTGGACCCCGTACGGACCCGAGTGGCGAATGTTGCGAAAAGTCTGTGTGATCAAGATGCTCAGCAGCGCCAGTTTAGACTCTGTCTACGAGCTCCGCCGTAGAGAGGTCAGAAACACCGTCGCGCACCTGTACCGGCGAGCCGGGTCGCCGGTCAACATCGGAGAGCAGGGCTTTCTGACCATTTTCAACGTGGTTACGAGCATGTTGTGGGGTGGGTCAGTGGAAGGAGACGAGAGAGACGGTCTCGCGGCTGAGTTCAGAGAGACGGTTTCGGACATGACTGAGCTACTGGGAAAGCCAAATGTTTCGGACTTCTTTCCCAGCTTGGCCGGTTTCGATCTCCAAGGTATTGAGAAGCAGATGCGTGAGCTCACTCCCAGATTTGATACCATTTTCGAGAGGATGATCGATCAACGACTGAAAATTGCCGGCGGGGAGGGCGACGCGAACGGGAAGAAGAATGATTTCTTGCAGTTCTTGCTTGAGCTGAAAGATGAAGGCGACGCCAAAACTCCTCTCACCATGACCCACCTTAAAGCCCTGCTCATGGACATGGTGCTGGGTGGGACAGACACATCGTCAAATACCATAGAGTTTGCGATGGCGGAGATGATGAAGAACCCAAAAACTCTGAAGAAAGCACAAGAAGAACTAGCGGCGGTGGTCGGAGAAGAGAACATGGTAGAAGAGTCGCACATCCAGAGTCTGCCATATCTGAAAGCCGCAATGAAAGAAACCTTGCGTTTGCACCCAATTCTACCGCTGCTAGTGCCGCACTGCCCGAGCGAGACCACCATCATCGCCAATTACGCAATCCCAAAGGGCTCTCGAGTGTTCGTCAACGTCTGGGCCATTCAGCGAGACCCCAATCAATGGGAAAATCCATTGGTGTTCGACCCAGAGAGGTTTCTGAACAGTAAATGGGATTTCGGGGGAAGTGATTTTCGGTACTTTCCGTTCGGCTCCGGCAGAAGAAACTGCGCAGGGATAGCCATGGCGGAACGAATGTTTATGTATTTGCTTGCTACGCTTTTGCATTCGTTCGATTGGAAATTGGAAGATGGTATGAAACTGGAGATTGAGGAGAAATTTGGGATTGTTTTGAAGAAGAAGACGCCTCTTGTTGTCATCCCAACGCCCAGGCTGTCGGATCCCGCTCTGTATCAGTAA 1590 53.14 MEPTSDSLQSLKNSVNFLFPRRWIHFADHQSRFLFTFFAGLLIFLYIKLRRRRLPLPPGPPGVPLLGNLPFLDPELHTYFAELGRKYGPIVKLQLGKKIGIIVSSPSVAREVLKDHDVTFANRDVPQAGRAASYGGSDIVWTPYGPEWRMLRKVCVIKMLSSASLDSVYELRRREVRNTVAHLYRRAGSPVNIGEQGFLTIFNVVTSMLWGGSVEGDERDGLAAEFRETVSDMTELLGKPNVSDFFPSLAGFDLQGIEKQMRELTPRFDTIFERMIDQRLKIAGGEGDANGKKNDFLQFLLELKDEGDAKTPLTMTHLKALLMDMVLGGTDTSSNTIEFAMAEMMKNPKTLKKAQEELAAVVGEENMVEESHIQSLPYLKAAMKETLRLHPILPLLVPHCPSETTIIANYAIPKGSRVFVNVWAIQRDPNQWENPLVFDPERFLNSKWDFGGSDFRYFPFGSGRRNCAGIAMAERMFMYLLATLLHSFDWKLEDGMKLEIEEKFGIVLKKKTPLVVIPTPRLSDPALYQ 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38499285 38501224 - Maker00003097 Lcy12g1768 649831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1768 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 200 218 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 84 103 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 108 129 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 FunFam Cytochrome P450 - like protein 46 515 - -
Lcy12g1768 529 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 PANTHER OS08G0547900 PROTEIN 39 529 - -
Lcy12g1768 529 Pfam Cytochrome P450 57 513 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 Gene3D Cytochrome P450 45 517 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 SUPERFAMILY Cytochrome P450 57 521 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1768 529 CDD CYP76-like 85 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1765 Lcy-Chr12:38454227 Lcy12g1768 Lcy-Chr12:38499285 3.52E-145 dispersed
Lcy12g1766 Lcy-Chr12:38475058 Lcy12g1768 Lcy-Chr12:38499285 2.13E-167 dispersed
Lcy12g1768 Lcy-Chr12:38499285 Lcy12g1770 Lcy-Chr12:38524490 2.64e-310 dispersed
Lcy7g1694 Lcy-Chr7:34189017 Lcy12g1768 Lcy-Chr12:38499285 5.98E-81 dispersed
Lcy12g1767 Lcy-Chr12:38491984 Lcy12g1768 Lcy-Chr12:38499285 2.86E-30 tandem
Lcy12g1768 Lcy-Chr12:38499285 Lcy12g1769 Lcy-Chr12:38510941 8.61e-319 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1768 - - - 0.0