Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1769 ATGGAACCCAGTTCCAATTTCCTTCAAAGTCTCATCGAATCCGTCAATCTCTTGTTTCCATGGCAGTGGATCGAAAACGCCAATAACCAAACGCGCTTTCTTCTCACCCTCTCCGCCGGGCTTCTAGTTCTCTTTTACGTCAAATATCGGCTGCGGCGATTGCGGCTGCCGCCGTGTCCGCCCGGCGTTCCACTGCTCGGAAATCTACCGTTTCTCGATCCAGAGCTTCACACTTACTTCAGGGAGTTGGGTAAAAAATACGGCCCAATTGTAAAGCTCCAACTCGGCAGGAAGATTGCCATAGTCGTCAACTCACCCTCCGTGGCACGTGAGATGTTGAAGGACAACGATATCACGTTCGCCAACCGCGACATTTCTCAGGCCGGGAGAATCGCCACGTACGGCGGTTACGACATAACTTGGACCCCATACGGAGCCGAGTGGCGGATGTTGAGAAAAGTTTGTCTGCTGAAGATGCTGAACAACGCCACGTTGGACTCTGTGTACGAGCTCCGGCGTAGAGAGGTGAGAAACACCGTGGCTCACCTGTACCGGCGAGCCGGGTCGGCGGTGAACATGGGAGAGCAGGGCTTTTTGACCATTTTCAACGTGGTCACGACCATGTTGTGGGGTGGGTCAGTGGAAGGGGAAGAGAGGGACGCGGTTGCGGCTGAGTTCAGAGAGATGGTTTCGCACATAACTGAGCTGCTGACTAAGCCTAATATTTCGGACTTCTTCCCGAGCTTGGCCCGTTTCGATCTCCAAGGAATTGAGAAGCAAATGCTTGAGCTTGTCCCAAGATTTGATACCATCTTCGAAAAGATGATCGATCAACGATTGAGAATGGCTGATCGGGACGAGAATGCGAAGACGAATGATTTCTTGCAGTTCTTGCTTAAGGTCAAAGATGAAGCCGATTCCAAAACACCCCTCACCATGGTCCAACTCAAAAGCTTGCTCATGGACATGGTAATAGGTGGAACGGACACATCCTCAAACACCATTGAGTTTGCAATGGCAGAGATGATGAAGAACCCTAGAGTTCTAAAGAAAGCCCAGGAAGAACTAGCAGCCGTGGTCGGAGAAGACAACATCGTAGAAGAGTCCCATATTCAGAGCTTGCCATATCTCAAAGCCGTAATGAAAGAAACCTTGCGTCTGCATCCAGCTCTGCCGCTGCTTGTGCCGCACTGCCCGAGCGAGACCACCATCATCTCCAATTACGCAGTCCCAAAGGGCTCTCGAGTGTTCATCAACGTCTGGGCCATTCAGCGAGACCCCGAACAGTGGGAAAACCCTTTGGAGTTCGACCCAGAGAGGTTCTTGAATAGTAAGTGGGATTTCAGTGGGAGTGATTTTCGTTACTTTCCATTCGGAGCTGGCAGAAGAAACTGCATTGGGGTAACCATGGCGGAAAGAACGTTCATGTATTTGCTTGCTACGCTTCTGCATTCGTTCGATTGGAAATTGAAAGAAGGTGAGAAATTGGAGACTGAGGAGAAATTTGGGACTGTTTTGAAGAAGAAGACGCCTCTTGTCGCCATCTTGACGCCCAGACTATCTAATCCCACTCTATACCAGTAA 1584 50.32 MEPSSNFLQSLIESVNLLFPWQWIENANNQTRFLLTLSAGLLVLFYVKYRLRRLRLPPCPPGVPLLGNLPFLDPELHTYFRELGKKYGPIVKLQLGRKIAIVVNSPSVAREMLKDNDITFANRDISQAGRIATYGGYDITWTPYGAEWRMLRKVCLLKMLNNATLDSVYELRRREVRNTVAHLYRRAGSAVNMGEQGFLTIFNVVTTMLWGGSVEGEERDAVAAEFREMVSHITELLTKPNISDFFPSLARFDLQGIEKQMLELVPRFDTIFEKMIDQRLRMADRDENAKTNDFLQFLLKVKDEADSKTPLTMVQLKSLLMDMVIGGTDTSSNTIEFAMAEMMKNPRVLKKAQEELAAVVGEDNIVEESHIQSLPYLKAVMKETLRLHPALPLLVPHCPSETTIISNYAVPKGSRVFINVWAIQRDPEQWENPLEFDPERFLNSKWDFSGSDFRYFPFGAGRRNCIGVTMAERTFMYLLATLLHSFDWKLKEGEKLETEEKFGTVLKKKTPLVAILTPRLSNPTLYQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38510941 38518022 - Maker00003011 Lcy12g1769 649832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1769 527 SUPERFAMILY Cytochrome P450 57 519 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 200 218 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 84 103 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 108 129 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 Gene3D Cytochrome P450 49 523 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 CDD CYP76-like 85 515 - -
Lcy12g1769 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy12g1769 527 FunFam Cytochrome P450 - like protein 46 513 - -
Lcy12g1769 527 Pfam Cytochrome P450 57 510 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy12g1769 527 PANTHER OS08G0547900 PROTEIN 33 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1769 Lcy-Chr12:38510941 Lcy12g1773 Lcy-Chr12:38560430 4.23E-138 dispersed
Lcy12g1771 Lcy-Chr12:38548812 Lcy12g1769 Lcy-Chr12:38510941 3.08E-72 dispersed
Lcy12g1772 Lcy-Chr12:38554197 Lcy12g1769 Lcy-Chr12:38510941 1.13E-20 dispersed
Lcy12g1768 Lcy-Chr12:38499285 Lcy12g1769 Lcy-Chr12:38510941 8.61e-319 tandem
Lcy12g1769 Lcy-Chr12:38510941 Lcy12g1770 Lcy-Chr12:38524490 1.80e-312 tandem
Lcy12g1769 Lcy-Chr12:38510941 Lcy2g1259 Lcy-Chr2:13420769 4.43E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1769 - - - 0.0