Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g1770 | ATGGAACCCACTTCCAATTTCCTTCAAACTCTCAATGATTCTGTCAATTCCACGCGCTTTCTTCTCACCCTCTTCGCCGGTTTTCTTCTCCTTCTTCTTTATCTCAAATTCTGGCGGCGGCGCTTGCGGCTGCCACCGGGTCCTCCGGGCGTTCCGCTGCTCGGAAATCTGCCGTTTCTCGACCCCGAACTTCACACTTACTTCACCCAACTGGGCCGGAAATACGGTCCGATCGTAAAGCTGCAACTCGGCAGTAAGATCGGCATAATCGTCAACTCACCCTCCGTGGCACGTGAGGTGTTGAAAGACCACGATGTCACGTTCGCCAATCGCGACGTTCCTCAGGCCGGGAGAGCCGCCACGTACGGCGGTTACGACGTAACTTGGACCCAGTACGGACCCGAGTGGCGGATGTTGAGAAAAGTTTGTACGATCAAGATGCTCAGCAACGCCACGCTGGACTCTGTGTACGAGCTCCGGCGTCGAGAGGTGAGAAACACCGTGGCTCACCTGTACCGACTGGCCGGGTCGCCGGTGAACATAGGAGAGCAGGGCTTTTTGACCATTTTCAACATCGTTACGAGCATGTCGTGGGGTGGGTCGGTGGAAGGGGAGCAGAGGGACCGAGTTGCGGCCGAGTTCAGAGAGACGGTTTCGGACATAACTGAGCTGCTGGGTAAGCCTAACGTTTCGGACTTTTTCCCGAGCTTGGCTCGATTCGATCTCCAAGGCGTTGAGAAGCAAATGCTTGAGCTCGTCCCGAAATTCGACAGCATCTTCGAAAAGATGATCGATGAGCGACTGAACATGGGCGGTGGGGACGAGATCAGTGGGAAGAAAAATGATTTCTTGCAGTTCTTACTAAAGGTCAAAGATGAAGGCGATTCCAAAACACCTCTCACCATGGTCCAACTCAAAGCCTTGCTCATGGATATGGTCATAGGTGGAACAGAAACATCCTCAAACACCATTGAGTTTGCGATGACGGAGATGCTAAAGAACCCAGAAGTTCTAAAGAAAGCCCAGCAAGAAGTAGCCGCTGTGGTCGGAGAAGACAACATCGTAGAAGAGTCCCATACTCAGAGCTTGCCATATCTCAAAGCCGTAGTGAAAGAAACCCTTCGTCTGCATCCACCTCTGCCACTGCTTGTGCCGCACTCCCCGAGCGAGACCACCATCGTCTCCAATTACGCAGTCCCAAAGGGTTCTCGAGTATTCATCAACGTCTGGGCCATTCATCGAGACCCCGATCACTGGGAAAACCCTTTGGAGTTCGACCCAGAGAGGTTCTTGAATAGTAAATGTGATTTCAGTGGGAGTGATTTTCGTTTCCTTCCATTTGGAGCTGGCAGAAGAAACTGCGCAGGGATAGCCATGGCCGAGAGAATGTTGATGCATGTGCTTGCCACGCTTCTGCATTCGTTCGATTGGAAATTGAAAGAAGGGGAGAGATTGGAGACTGAGGCCAAGTTTGGGATTGTTTTGAAGAAGAAGACGCCTCTTGTTGTCATATTGACGCCTAGGCTATCTAACCCCACTCTATACCAGTAA | 1551 | 51.77 | MEPTSNFLQTLNDSVNSTRFLLTLFAGFLLLLLYLKFWRRRLRLPPGPPGVPLLGNLPFLDPELHTYFTQLGRKYGPIVKLQLGSKIGIIVNSPSVAREVLKDHDVTFANRDVPQAGRAATYGGYDVTWTQYGPEWRMLRKVCTIKMLSNATLDSVYELRRREVRNTVAHLYRLAGSPVNIGEQGFLTIFNIVTSMSWGGSVEGEQRDRVAAEFRETVSDITELLGKPNVSDFFPSLARFDLQGVEKQMLELVPKFDSIFEKMIDERLNMGGGDEISGKKNDFLQFLLKVKDEGDSKTPLTMVQLKALLMDMVIGGTETSSNTIEFAMTEMLKNPEVLKKAQQEVAAVVGEDNIVEESHTQSLPYLKAVVKETLRLHPPLPLLVPHSPSETTIVSNYAVPKGSRVFINVWAIHRDPDHWENPLEFDPERFLNSKCDFSGSDFRFLPFGAGRRNCAGIAMAERMLMHVLATLLHSFDWKLKEGERLETEAKFGIVLKKKTPLVVILTPRLSNPTLYQ | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 38524490 | 38528760 | - | Maker00003064 | Lcy12g1770 | 649833 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g1770 | 516 | PRINTS | P450 superfamily signature | 315 | 332 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | P450 superfamily signature | 368 | 379 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | P450 superfamily signature | 454 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | P450 superfamily signature | 445 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | Gene3D | Cytochrome P450 | 35 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 447 | 456 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy12g1770 | 516 | PANTHER | OS08G0547900 PROTEIN | 17 | 516 | - | - | |
| Lcy12g1770 | 516 | CDD | CYP76-like | 73 | 504 | - | - | |
| Lcy12g1770 | 516 | SUPERFAMILY | Cytochrome P450 | 45 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | Pfam | Cytochrome P450 | 45 | 500 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 454 | 477 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 188 | 206 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 444 | 454 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 324 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 304 | 321 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 367 | 385 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 72 | 91 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 96 | 117 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | PRINTS | E-class P450 group I signature | 408 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy12g1770 | 516 | FunFam | Predicted protein | 313 | 503 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g1767 | Lcy-Chr12:38491984 | Lcy12g1770 | Lcy-Chr12:38524490 | 1.83E-29 | dispersed | |
| Lcy12g1768 | Lcy-Chr12:38499285 | Lcy12g1770 | Lcy-Chr12:38524490 | 2.64e-310 | dispersed | |
| Lcy12g1770 | Lcy-Chr12:38524490 | Lcy13g0099 | Lcy-Chr13:968672 | 3.06E-115 | dispersed | |
| Lcy12g1770 | Lcy-Chr12:38524490 | Lcy12g1772 | Lcy-Chr12:38554197 | 1.50E-18 | proximal | |
| Lcy12g1770 | Lcy-Chr12:38524490 | Lcy12g1773 | Lcy-Chr12:38560430 | 7.07E-134 | proximal | |
| Lcy12g1769 | Lcy-Chr12:38510941 | Lcy12g1770 | Lcy-Chr12:38524490 | 1.80e-312 | tandem | |
| Lcy12g1770 | Lcy-Chr12:38524490 | Lcy12g1771 | Lcy-Chr12:38548812 | 5.24E-71 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g1770 | - | - | - | 0.0 |