Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1797 ATGTCATCCTCTTCTTCTTCTCCTACTCCTCCTCCTACTTCTTCTACTACTACTGCTGCTTTGTCTCAGCAGCAGCAGCAGCTGGACCACCACCTTCCTTCAGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTCAGTGTTCCTTGCTCTAGCTTGTTCAAAACTGTCACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCCTGCTCTTGCCTTCTACTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCACAACATTATGGAAAATATCCCAGCTCCAAATTCCAATTATCTCATCAACCAGTTCGCATCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAGCTCCCTCGGCCCCCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTCTGATCAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTTTCCCATTTCTAA 708 48.16 MSSSSSSPTPPPTSSTTTAALSQQQQQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSHNIMENIPAPNSNYLINQFASTNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLIKDNGFYASANVGVSHF 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39024582 39027061 + Maker00038293 Lcy12g1797 649860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1797 235 MobiDBLite consensus disorder prediction 130 150 - -
Lcy12g1797 235 SUPERFAMILY HMG-box 141 190 IPR036910 -
Lcy12g1797 235 CDD HMG-box_SF 151 187 - -
Lcy12g1797 235 MobiDBLite consensus disorder prediction 1 27 - -
Lcy12g1797 235 Gene3D High mobility group box domain 142 210 IPR036910 -
Lcy12g1797 235 Pfam YABBY protein 35 197 IPR006780 GO:0007275(InterPro)
Lcy12g1797 235 PANTHER PROTEIN YABBY 6-RELATED 35 206 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Lcy12g1797 235 FunFam Axial regulator YABBY 142 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1797 Lcy-Chr12:39024582 Lcy2g0725 Lcy-Chr2:6394783 1.66E-54 dispersed
Lcy12g1797 Lcy-Chr12:39024582 Lcy6g2070 Lcy-Chr6:43840147 5.12E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19290 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1797 K25796 - csv:101214748 409.453