Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g1797 | ATGTCATCCTCTTCTTCTTCTCCTACTCCTCCTCCTACTTCTTCTACTACTACTGCTGCTTTGTCTCAGCAGCAGCAGCAGCTGGACCACCACCTTCCTTCAGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGCGACACTGTCCTTGCGGTCAGTGTTCCTTGCTCTAGCTTGTTCAAAACTGTCACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCCTGCTCTTGCCTTCTACTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCACAACATTATGGAAAATATCCCAGCTCCAAATTCCAATTATCTCATCAACCAGTTCGCATCTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAGCTCCCTCGGCCCCCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTCTGATCAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTTTCCCATTTCTAA | 708 | 48.16 | MSSSSSSPTPPPTSSTTTAALSQQQQQLDHHLPSAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSHNIMENIPAPNSNYLINQFASTNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLIKDNGFYASANVGVSHF | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 39024582 | 39027061 | + | Maker00038293 | Lcy12g1797 | 649860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g1797 | 235 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
Lcy12g1797 | 235 | SUPERFAMILY | HMG-box | 141 | 190 | IPR036910 | - | |
Lcy12g1797 | 235 | CDD | HMG-box_SF | 151 | 187 | - | - | |
Lcy12g1797 | 235 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lcy12g1797 | 235 | Gene3D | High mobility group box domain | 142 | 210 | IPR036910 | - | |
Lcy12g1797 | 235 | Pfam | YABBY protein | 35 | 197 | IPR006780 | GO:0007275(InterPro) | |
Lcy12g1797 | 235 | PANTHER | PROTEIN YABBY 6-RELATED | 35 | 206 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER) | |
Lcy12g1797 | 235 | FunFam | Axial regulator YABBY | 142 | 213 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1797 | Lcy-Chr12:39024582 | Lcy2g0725 | Lcy-Chr2:6394783 | 1.66E-54 | dispersed | |
Lcy12g1797 | Lcy-Chr12:39024582 | Lcy6g2070 | Lcy-Chr6:43840147 | 5.12E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19290 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g1797 | K25796 | - | csv:101214748 | 409.453 |