Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1805 ATGTCAGTTTACAGAGACGAGGATCCTCGCATCCATGGCATCAGGACTAAGATTCGTGTTGTGCCTAATTTCCCTCAACCAGGTATCATGTTCCAAGACATAACCACTCTGCTACTCGACCCCAAAGCATTCAAAGATACAGTTGATTTGTTCGTCGAGCGGTACAAAGGGAAGAACATTTCGGTTGTTGCAGGAGTTGAAGCTCGGGGTTTTATCTTTGGCCCTCCGATTGCATTAGCCATAGGAGCAAAATTTGTCCCTTTAAGGAAACCGAGGAAGCTACCTGGAGAAGTTATTTCTGAGAAGTACATATTAGAATATGGAAGTGATTGCCTGGAGATGCATGTTGGAGCCGTCAAACCACATGAACGGGCGTTAGTGGTGGACGACTTGATTGCAACAGGTGGCACTCTTCGTGCAGCTATGAATTTACTTGAACGTGTTGGAGCTGAAGTAATTGAATGTGCTTGCGTCATTGAATTGCCAGATTTAAAGGAAGATAAGTTTTCATCCATTGATGCAGCAAAGATGGACTTTGCATCTGAGGATGGTATTGGCTGCTTCTCAATTCCCACCTTTTAA 582 44.16 MSVYRDEDPRIHGIRTKIRVVPNFPQPGIMFQDITTLLLDPKAFKDTVDLFVERYKGKNISVVAGVEARGFIFGPPIALAIGAKFVPLRKPRKLPGEVISEKYILEYGSDCLEMHVGAVKPHERALVVDDLIATGGTLRAAMNLLERVGAEVIECACVIELPDLKEDKFSSIDAAKMDFASEDGIGCFSIPTF 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39142716 39147434 + Maker00038080 Lcy12g1805 649868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1805 193 Pfam Phosphoribosyl transferase domain 49 168 IPR000836 -
Lcy12g1805 193 CDD PRTases_typeI 48 173 IPR000836 -
Lcy12g1805 193 Hamap Adenine phosphoribosyltransferase [apt]. 14 193 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Lcy12g1805 193 Gene3D - 2 179 IPR029057 -
Lcy12g1805 193 SUPERFAMILY PRTase-like 13 164 IPR029057 -
Lcy12g1805 193 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 168 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Lcy12g1805 193 FunFam Adenine phosphoribosyltransferase 1 2 176 - -
Lcy12g1805 193 NCBIfam adenine phosphoribosyltransferase 15 168 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1805 K00759 - - csv:101216186 322.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1798 Lcy-Chr13:36957562 Lcy12g1805 Lcy-Chr12:39142716 5.73E-89 transposed
Lcy13g2129 Lcy-Chr13:40188667 Lcy12g1805 Lcy-Chr12:39142716 5.64E-85 transposed
Lcy12g1805 Lcy-Chr12:39142716 Lcy6g2077 Lcy-Chr6:43980659 4.31E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy8g1180 . 69 556 PRT Gene Family AT2G16570 84.1 1.2e-241 833.2
Lcy8g1180 . 61 556 PRT Gene Family AT4G34740 83.5 1.4e-242 836.3
Lcy8g1180 . 34 529 PRT Gene Family AT4G38880 70.6 4.8e-197 684.9
Lcy13g2129 . 98 281 PRT Gene Family AT1G27450 82.6 1.5e-81 299.7
Lcy12g1805 . 7 165 PRT Gene Family AT1G27450 76.7 1.2e-67 253.4
Lcy13g1798 . 11 171 PRT Gene Family AT1G27450 72.7 3.7e-64 241.9
Lcy6g2077 . 3 145 PRT Gene Family AT1G27450 75.7 3.3e-57 218.8
Lcy12g1805 . 30 165 PRT Gene Family AT1G80050 78.7 8.5e-57 217.2
Lcy13g1798 . 33 168 PRT Gene Family AT1G80050 80.9 1.1e-56 216.9
Lcy13g2129 . 127 276 PRT Gene Family AT1G80050 69.3 6.1e-55 211.1
Lcy6g2077 . 30 145 PRT Gene Family AT1G80050 76.7 6.8e-46 181.0
Lcy12g1805 . 6 104 PRT Gene Family AT4G22570 80.8 1.2e-43 172.9
Lcy6g2077 . 1 97 PRT Gene Family AT4G22570 81.6 1.5e-41 166.0
Lcy13g2129 . 102 194 PRT Gene Family AT4G22570 79.6 4.0e-39 157.9
Lcy13g1798 . 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Lcy12g1805 . 1 96 PRT Gene Family AT4G12440 82.3 2.6e-40 161.8
Lcy6g2077 . 1 96 PRT Gene Family AT4G12440 80.2 1.8e-38 155.6
Lcy13g2129 . 98 193 PRT Gene Family AT4G12440 78.1 3.5e-37 151.4
Lcy13g1798 . 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Lcy13g1798 . 1 148 PRT Gene Family AT5G11160 81.1 5.7e-64 241.1
Lcy12g1805 . 8 145 PRT Gene Family AT5G11160 75.4 2.9e-55 212.2
Lcy13g2129 . 105 242 PRT Gene Family AT5G11160 72.5 7.0e-54 207.6
Lcy6g2077 . 8 151 PRT Gene Family AT5G11160 71.5 1.2e-53 206.8
Lcy10g1606 . 1 188 PRT Gene Family AT1G71750 65.8 1.1e-69 260.4
Lcy12g0160 . 19 482 PRT Gene Family AT1G55810 74.6 9.3e-202 700.3
Lcy12g0160 . 80 482 PRT Gene Family AT3G27440 75.7 6.4e-181 630.9
Lcy12g0160 . 1 483 PRT Gene Family AT3G27190 86.4 1.3e-246 849.4
Lcy1g1484 . 12 275 PRT Gene Family AT3G53900 65.9 4.1e-97 352.1
Lcy12g0160 . 10 482 PRT Gene Family AT4G26510 76.1 1.9e-213 739.2
Lcy12g0160 . 1 482 PRT Gene Family AT5G40870 86.3 1.5e-245 845.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139