Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1811 ATGGCTTCCAAAGCTACAGCCTCCCTTGCCTTCCTCCTCTCTCTCAACCTCCTCTTCTTCTCCCTTGTCTCAGCCTGCAACAACTGCAATGTTCCCGCCCCATCCAAGCCCAAGCCATGCCCTCCATCTACAAAGCCAACCCCTTCATCTAGCTTTGGGAAGTGCCCAAGGGACACCCTTAAACTCGGCGTCTGCGCCAAGCTGCTCGGCGGCCTCGTCGACGTTACCATCGGCAAGCCCCCGGTGACGCCGTGCTGCAGCCTGATCGAAGGCCTTGCTGATCTTGAAGCTGCTGTCTGCCTTTGCACTGCCATTAAGGCTAATGTTTTGGGCCTCAACCTCAATGTCCCTGTCTCCCTCAGCTTGCTCCTCAATGTTTGCAGCAAGAACGTTCCCAAGGGATTCCAGTGCTGA 414 56.28 MASKATASLAFLLSLNLLFFSLVSACNNCNVPAPSKPKPCPPSTKPTPSSSFGKCPRDTLKLGVCAKLLGGLVDVTIGKPPVTPCCSLIEGLADLEAAVCLCTAIKANVLGLNLNVPVSLSLLLNVCSKNVPKGFQC 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39258186 39258599 + Maker00037857 Lcy12g1811 649874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1811 137 Gene3D - 54 137 IPR036312 -
Lcy12g1811 137 CDD HPS_like 52 137 IPR027923 -
Lcy12g1811 137 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Lcy12g1811 137 Pfam Hydrophobic seed protein 55 137 IPR027923 -
Lcy12g1811 137 PANTHER - 7 137 IPR051636 -
Lcy12g1811 137 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 57 137 IPR036312 -
Lcy12g1811 137 FunFam pEARLI1-like lipid transfer protein 1 53 137 - -
Lcy12g1811 137 MobiDBLite consensus disorder prediction 34 53 - -
Lcy12g1811 137 SMART aai_6 55 137 IPR016140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1811 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1811 Lcy-Chr12:39258186 Lcy12g1813 Lcy-Chr12:39269774 1.08E-83 dispersed
Lcy12g1810 Lcy-Chr12:39249540 Lcy12g1811 Lcy-Chr12:39258186 1.02E-63 tandem
Lcy12g1811 Lcy-Chr12:39258186 Lcy12g1812 Lcy-Chr12:39262192 4.63E-69 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g515 . . . . Bpe05g00586 . . . . . . Cma15g01138 . . Sed01g4008 . . Bhi11g00209 Tan01g2014 Cmetu09g0055 . . Mch10g1543 . Cla10g00273 Cam10g0282 Cec10g0290 Cco10g0287 Clacu10g0284 Cmu10g1124 Cre10g0532 . . Cone6ag0687 . Lsi07g01317 Csa05g00408 Chy09g01104 Cme06g02599 . . . . . . . . . . Cmo15g01197 . . . . . . Bhi12g00426 . . . . . Lcy12g1811 Cla01g00382 Cam01g0399 Cec01g0391 Cco01g0412 . . Cre09g2128 Lsi09g00412 Csa03g00295 . Cme09g01630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266