Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1820 ATGGCTTCTAAAACTTCTCTCCCTCTTGTTTTCTTCTGTTTGTTCAATCTTCTCTTTTGTACACTCGTCACCGCTACTTGTACATGTCCTTCTCTACCCAAGTCGAAATCTCCTCCACAACCAACCTACCCAATGCCAAAACCGAACCAGAAACCAAGTCCAAGTCCACCCCCGGCTCCAAAATATCCTTCTACTGACTATGAAAAATGTCCTAAAGATGCTGTTAAAATAGGCATATGTGCAAAGTTGCTGAACAATGATCTCCTCAAAGTCATTCTTGGTAAACCACCTGTGGCTCCATGTTGCACTCTCATTGAAGGGCTTGCTGACATTGAAGCTGCTGTCTGTCTTTGTACTGCCATTAAGGCAAGCATTTTGGGCATCCACCTTCACAATATACCAATTTCACTCACTTTGCTTGCTAATTATTGTGGTGGAAAAGTTCCATCCGGCTTCCAGTGTCCTTGA 468 43.38 MASKTSLPLVFFCLFNLLFCTLVTATCTCPSLPKSKSPPQPTYPMPKPNQKPSPSPPPAPKYPSTDYEKCPKDAVKIGICAKLLNNDLLKVILGKPPVAPCCTLIEGLADIEAAVCLCTAIKASILGIHLHNIPISLTLLANYCGGKVPSGFQCP 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39335299 39335766 - Maker00038212 Lcy12g1820 649883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1820 155 PANTHER - 9 154 IPR051636 -
Lcy12g1820 155 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 73 155 IPR036312 -
Lcy12g1820 155 MobiDBLite consensus disorder prediction 33 67 - -
Lcy12g1820 155 Gene3D - 69 155 IPR036312 -
Lcy12g1820 155 MobiDBLite consensus disorder prediction 34 64 - -
Lcy12g1820 155 CDD HPS_like 69 154 IPR027923 -
Lcy12g1820 155 Pfam Hydrophobic seed protein 70 155 IPR027923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1820 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1820 Lcy-Chr12:39335299 Lcy12g1822 Lcy-Chr12:39348893 1.64E-79 dispersed
Lcy12g1819 Lcy-Chr12:39325564 Lcy12g1820 Lcy-Chr12:39335299 9.02E-44 tandem
Lcy12g1820 Lcy-Chr12:39335299 Lcy12g1821 Lcy-Chr12:39343917 1.21E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g518 Blo02g01047 . . . . . Bma07g01600 . Cmo06g00795 . . Cma15g01133 . . Sed03g1246 . . Bhi11g00206 Tan01g2018 Cmetu06g2397 . . Mch10g1550 . Cla10g00267 Cam10g0275 Cec10g0283 Cco10g0279 Clacu10g0277 Cmu10g1117 Cre10g0526 . . . . Lsi07g01312 Csa05g00414 Chy09g01096 Cme06g02585 . Blo19g00256 . . Bpe08g01433 . . Bma12g00161 . . Cmo15g01192 Cma06g00775 . . . . . Bhi12g00431 . . Lac11g2276 . . Lcy12g1820 Cla01g00386 Cam01g0403 Cec01g0395 Cco01g0416 Clacu01g0404 Cmu01g0385 Cre09g2123 Lsi09g00416 Csa03g00286 Chy06g02037 Cme09g01625
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012653 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 4 5 1 0 0 4 0 21