Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1824 ATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAAAAAAGAAAAGCAGAAGCTGCAAGGATTAGGGAGAAATACCCTGATAGAATTCCAGTTATCGTGGAAAAGGCGGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAAGTACCTAGTTCCAGCAGACCTTACCGTGGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCAGAGAAAGCGATCTTCATATTCGTGGACGACGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGATGGTAG 357 42.3 MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDDVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39360833 39364005 - Maker00038126 Lcy12g1824 649887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1824 118 FunFam Autophagy-related protein 1 117 - -
Lcy12g1824 118 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Lcy12g1824 118 Gene3D - 1 117 - -
Lcy12g1824 118 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 4 117 IPR004241 GO:0006995(PANTHER)
Lcy12g1824 118 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Lcy12g1824 118 CDD Ubl_ATG8 12 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1824 K08341 - - csv:101205863 236.498
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1824 Lcy-Chr12:39360833 Lcy13g0914 Lcy-Chr13:16658931 1.03E-71 dispersed
Lcy12g1824 Lcy-Chr12:39360833 Lcy8g1438 Lcy-Chr8:41023921 6.41E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g525 . . . . . . Bma07g01599 . . . . Cma15g01127 . Car15g01032 . . . . . . . . . . . . . . . . . Cone8ag0393 . Cone6ag0676 Cone9ag0681 . Csa05g00416 Chy09g01093 . . Blo19g00255 . Bda09g00097 Bpe08g00875 . . . . . Cmo15g01186 . . . . . Cpe13g00229 Bhi12g00436 . . Lac11g2279 . . Lcy12g1824 Cla09g01215 Cam09g1280 Cec09g1296 Cco09g1326 . . Cre09g1240 . . . Cme09g01622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151