Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1830 ATGACCGTTATAAACACACCCCCCAAAAAAAAAAAAAAAAAAAACATTTGTTCTATCTGCCAAAATCATTCCAATCCTTATTTATACATTTCTCAACATTCTCAAATTCCTCAATTTCTCTCTCTCTCTCTCTCTCTCTCTAAAATGGCATTCTTCATTAACTCGTTTTTCTTCATTTCCATTTCCAGTACTTTCTTTCTTCTTCTATCGACCTCTCCCCCGGCCGCTGCCGCCGCCGCAGAGCACCGCCGTCACAAGTGGGTCGGACCGACCGGCCACCGTCTTATCAAAGTGGACGTTAACGGCTCCGGCGAGTTCCTCTCCGTCCAAGCCGCCGTCGATGCAGTCCCCGATTACAACACCGTCAACACCCTCATCCGAATCGGCCCTGGATATTACGTGGAGAAGGTGGTGGTTCCGGCGACGAAGCCGTACATAACATTTGAAGGAGCGGGAAAAGAGAGGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAGCTTCGTACTTACAGAACAGCCTCTGTGACAGTTTTTGCCAATTACTTCTCTGCCCGAAACATCAGCTTCAAGGTAAATACTACTACCCCACCACAATTTCCAACTTGGCTGCACGTGAACTTCCTTCTTTCCAACACAAACCTAAAAACTCTCTCACTCGAACCAACAAAGATACTTGACTGCATATCGGGAGATCCCTACATACCGAATACAGCACCGGCGCCGATGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGCATTTCCGGCGACAAAGCGTACTTTTCGGGCTGTGGATTCTACGGCGCACAAGATACGCTGTGTGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATCGAAGGCTCCATTGATTTCATCTTTGGAAATGGCCGTTCCATGTATAAGGATTGCGAGCTGCACTCAATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGTACGAGAAGACCGGGTTCGCTTTCGTCCGGTGCAAAGTGACCGGTTCAGGTCCCCTGTACGTGGGCCGGGCCATGGGCCAGTACTCTAGAATCGTTTACGCGTATACTTACTTTGATGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAATGCTGGGGCCCAGGAGCAAGTAAAGTAAAGGGAGTGTCATGGGCCAGGGAGTTGGACTTTGAAGAGGCCCATCCATTTCTTGTGAAGAGCTTTGTCAATGGCAGGCACTGGATTGCACCCTCTGATGCTTAA 1329 50.79 MTVINTPPKKKKKKNICSICQNHSNPYLYISQHSQIPQFLSLSLSLSKMAFFINSFFFISISSTFFLLLSTSPPAAAAAAEHRRHKWVGPTGHRLIKVDVNGSGEFLSVQAAVDAVPDYNTVNTLIRIGPGYYVEKVVVPATKPYITFEGAGKERTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKVNTTTPPQFPTWLHVNFLLSNTNLKTLSLEPTKILDCISGDPYIPNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPYEKTGFAFVRCKVTGSGPLYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELDFEEAHPFLVKSFVNGRHWIAPSDA 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39414750 39420673 + Maker00038028 Lcy12g1830 649893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1830 442 SUPERFAMILY Pectin lyase-like 93 439 IPR011050 -
Lcy12g1830 442 ProSitePatterns Pectinesterase signature 2. 295 304 IPR033131 -
Lcy12g1830 442 Gene3D - 93 441 IPR012334 -
Lcy12g1830 442 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 74 438 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lcy12g1830 442 Pfam Pectinesterase 98 202 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy12g1830 442 Pfam Pectinesterase 251 433 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy12g1830 442 FunFam Pectinesterase 235 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1830 Lcy-Chr12:39414750 Lcy9g1120 Lcy-Chr9:35112843 1.15E-90 dispersed
Lcy12g1830 Lcy-Chr12:39414750 Lcy4g1777 Lcy-Chr4:43837242 5.66E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1830 - - - 0.0