Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1833 ATGATCGCTATTGGTTCCGCTTCTGAATCGTCATCGTCTTCAATTCTCCGATGGCTTCTTCAGCCTGCAAATGCAGCCGCTTACATTGCTCGATTCTATTGTGTTTGGGAGAAAAGGAAAGAAAAAGGAATCGAAGAGATAATAATGAAGATTGGAGGAATGGAAAATGTGGTGGTAATTGGAGGATTGATTGCGGTGCAGTTCATCTACGCCGGAAACTCGGTATTACTGAGTTATTTGATGTCGTTAGGGCTCAGTCCTCTCACGGTTGTCATCTGTATTTCCTCAGCCACTTTTCTTTTTCTGTCTCCTCTCGCTGTTTGTTTTGAAAGGAGCAGTTGGCCCAAGAAATTGAGTTTCAAGTTGCTGCTTCAGCTTGTTCTGATCTCCTTTGGCGGGGTAACTTTGTTCCAAACTCTGCAATTAGAAGGGATAAAGCTGACTTCTCCAGCCATGTCATCTGCCATGCCAAACCTTGCTCCCGGTCTCATCTTTATCATTGCCTGGTGTTTTAGATTAGAGAGAGTCAAACTTAGTTGTCTGTACAGCAAAGTTAAGATTATAGGGACATTGCTTTGTGTAGTAGGTGCTATCACAATGAGCATTCTGCAGAGCACCGTCACGATTCCGGCAAAGGAGCAGCTAACATCTTCACCTCCAACTGTACTCTTCAATAAGGAAAAGATTCTTGGTTGTTTGTATCTCATGGTGGCGGTCTTCATATTATCAAGCAATGTTGTATTGCAGGCTACAGCACTTGGTGAATTACCAGCTCCAATGTCGTTGAGTGCTGCAACGTCGTTCATTGGAGTGCTCACGACCGCAGCTGTACGACTAATGCAAAATCATAAGTTAGAAACCGATTGGTCTAATGTCAACATTAAGAATTTACTCTGCTACTCTCTATTGGGAGGAATAGTGAGTGGCATAAGCTTGAGCTTCAATGGATGGGCAATGAAGAAAAGAGGGCCAGTTTTGGTGTCAATTTTCAGTCCCATTGGAACAGTTTTCTCTGTCATTCTCTCTGTCTCCACCTTAGGAGACACTATTTCCATTGGAAGCCTTGCTGGTATGTTCTTGATGTTCTGTGGGCTCTACTTTGTGCTTTGGGCAAAAGGAAAAGAAGGTTACTGTGATGGGAATGGCTATCACAGTGATGACTTTGATATTGAGAAACCTTTACTCTCTTGA 1191 43.16 MIAIGSASESSSSSILRWLLQPANAAAYIARFYCVWEKRKEKGIEEIIMKIGGMENVVVIGGLIAVQFIYAGNSVLLSYLMSLGLSPLTVVICISSATFLFLSPLAVCFERSSWPKKLSFKLLLQLVLISFGGVTLFQTLQLEGIKLTSPAMSSAMPNLAPGLIFIIAWCFRLERVKLSCLYSKVKIIGTLLCVVGAITMSILQSTVTIPAKEQLTSSPPTVLFNKEKILGCLYLMVAVFILSSNVVLQATALGELPAPMSLSAATSFIGVLTTAAVRLMQNHKLETDWSNVNIKNLLCYSLLGGIVSGISLSFNGWAMKKRGPVLVSIFSPIGTVFSVILSVSTLGDTISIGSLAGMFLMFCGLYFVLWAKGKEGYCDGNGYHSDDFDIEKPLLS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39447035 39452598 - Maker00038179 Lcy12g1833 649896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1833 396 PANTHER WAT1-RELATED PROTEIN 64 376 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lcy12g1833 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 293 373 - -
Lcy12g1833 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 100 201 - -
Lcy12g1833 396 Pfam EamA-like transporter family 230 369 IPR000620 GO:0016020(InterPro)
Lcy12g1833 396 Pfam EamA-like transporter family 63 201 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1833 Lcy-Chr12:39447035 Lcy4g1766 Lcy-Chr4:43696502 4.89E-37 dispersed
Lcy12g1833 Lcy-Chr12:39447035 Lcy6g2115 Lcy-Chr6:44818448 1.74E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1833 - - - 0.0