Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1837 ATGGTGAAGTTGGCCGTTGGCTCCGCCGCCGACTCGTTCAGTGCGGCCTCTCTCAAAGCCTATCTCGCCGAGTTCATCGCCACTCTCCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTATGGTAAGTTGACGGCCGATGCAGCACTGGATCCACCGGGGCTGGTGGCCGTGGCTGTGGCTCATGCATTCGCCCTCTTCGTCGGTGTGTCGATGGCGGCGAACATCTCCGGCGGGCACCTGAACCCGGCGGTGACCTTCGGGTTGGCGATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAGTTGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGCGTGGCAGCGGGACTCGGAGCAATTGAAGGCGTAGTGTTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGATCCCAAAAAGGGCTCTCTTGGGACCATCGCGCCAATTGCTATTGGGTTCATTGTCGGAGCCAACATCCTGGCCGCCGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTGGCCGGAGACTTCTCCCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATTTATGGCGACGTCTTTATTGGCTCTTATGCCTCTGTTCCAGTCTCTGCTGATTATGCTTAA 753 58.83 MVKLAVGSAADSFSAASLKAYLAEFIATLLFVFAGVGSAIAYGKLTADAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSADYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39486350 39489320 + Maker00037994 Lcy12g1837 649900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1837 250 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Lcy12g1837 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lcy12g1837 250 PANTHER AQUAPORIN-8 3 238 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lcy12g1837 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 FunFam Probable aquaporin TIP1-1 2 249 - -
Lcy12g1837 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy12g1837 250 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1352 Lcy-Chr12:30053485 Lcy12g1837 Lcy-Chr12:39486350 1.99E-68 dispersed
Lcy12g1837 Lcy-Chr12:39486350 Lcy1g1316 Lcy-Chr1:12646879 1.47E-100 dispersed
Lcy12g1837 Lcy-Chr12:39486350 Lcy3g2133 Lcy-Chr3:48287893 2.04E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1837 K09873 - csv:101203925 457.988