Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1863 ATGTACCAGAGCACTAAAACAGAGTCGGAATTTGCTTTTCTTGACCCAATTCGCCGCCACTTGTTGGGCGAATCGGAGGTTTCCGCCGCCGTCGGTGCCGCCGTTCCCGGCGGCAGACCCACTCCCGTTTTCACCCGGACTGGTAGTTTCAGTAGCTTGATTCCATGTCTTGATGACAATTGGGGCGATTTGCCTCTCAAGGTGGACGACTCTGAAGATATGCTGCTCGCCGCCGTTCTCCGGGATGCCGTCGGTGCAGGGTGGGTTCCGTCGCTCAATCCATCGGCGTTCGGAAGTTGCGATTTTGAATTTGCGGCGGTGAAGTCGGAGCCGGAGGTGCTTCCGGTGAGTTTCCCACCGGTGCTACCGAATGTGGCGGTGAAGCCGGTGGTGGTACCGGAGAAGGGGAAGCATTATAGAGGAGTGCGACAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGGGATCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACCTATGAGACGGCGGAGGATGCGGCTCTAGCTTATGATCGAGCGGCCTACCGAATGCGAGGCTCGAGGGCTCTGCTCAATTTCCCCCTCCGAATCAACTCCGGCGAGCCCGAACCGGTTCGAGTCACGTCGAAGCGATCGTCGCCGGAGCTTTCATCTTCACCAAAGCGGCGGAAGAAGGTTAGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTCAGCCACTGCTAA 774 57.75 MYQSTKTESEFAFLDPIRRHLLGESEVSAAVGAAVPGGRPTPVFTRTGSFSSLIPCLDDNWGDLPLKVDDSEDMLLAAVLRDAVGAGWVPSLNPSAFGSCDFEFAAVKSEPEVLPVSFPPVLPNVAVKPVVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTSKRSSPELSSSPKRRKKVSSAVEGGGVQVEQQVASFTHGGQLFVSHC 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39804741 39805514 + Maker00038032 Lcy12g1863 649926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1863 257 Pfam AP2 domain 138 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1863 257 MobiDBLite consensus disorder prediction 204 234 - -
Lcy12g1863 257 CDD AP2 137 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1863 257 SUPERFAMILY DNA-binding domain 138 198 IPR016177 GO:0003677(InterPro)
Lcy12g1863 257 PANTHER DNA-BINDING DOMAIN 121 226 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy12g1863 257 Gene3D AP2/ERF domain 137 199 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1863 257 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1863 257 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1863 257 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1863 257 FunFam Ethylene-responsive transcription factor 2 137 197 - -
Lcy12g1863 257 SMART rav1_2 138 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1863 Lcy-Chr12:39804741 Lcy6g2137 Lcy-Chr6:45213564 8.70E-101 dispersed
Lcy12g1863 Lcy-Chr12:39804741 Lcy6g2135 Lcy-Chr6:45171207 6.71E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19292 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1863 K09286 - csv:101221583 386.726