Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1875 ATGGACCTTGCTGTCACTGTGGAGTTACAAAAGAGTGTTGATTTTCAGCTTGGCACTCCCCTTTGGCGTAATGGGCCTCCCGACAAACCGGTATTATGCAATGCATGTGGGTCCCGATGGAGGACAAAGGGAACACTTGCAAACTATACCCCTTTGCATGCTCGGGCTGATCCTGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAGCATTTCATTAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGATGGACGATTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTTGATGAAGACACAAGCAATAGATCCAGTTCTGGATCAGCAATATCTAATCCTGAAAGCTGTGCCCATTTTAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGACCATGGTGCCTTCCAGGAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATTTTGCATGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTTTCAGTTGATAACAAACAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCAACTGTTCTTGTATGTAGTGACAACAAGGGTATGAATTTTCCAACATCTAGGATTGGAAAGATGAAGAGTCCTTCTGGATCAGGGGTACAACAAGGACAAATTAAAAGGGTAAGACTAGAAGATGTGGCTAAGTACTTAACTATGAATGATATCAGGGACGATTCTCATTACGAAAGTTTTCAAATTCTCGGAAACCATAACTCGCCCTTATGTGATGCAGATATAAATGACATTATAAACTTTGGCGAGTTTGCGAAACAACTAACAAATGAGGAACAACAGCAATTAATGAAGTATCTACCACAGGTTGATATCGCTGAACTTCCTGAGACCCTCAAGAGCATGTTTGAGAGCCCCTATTTCAAGGAGAATGTAACTTCCTTCCAACAACTGCTTAGGGAGGGCGTTTTCGATTTCTCCTTCCTTGGGACAAAGATCGAAGACTGCAAGACTCTGAAAAGGCTTGTATTATATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCAGCAACTGACGGTTAGGGCTGATTTTATGAAATGTAAAAATGGTAGCAAAGGATCTTTTCTTCCCAATGCCAACGCCTCGGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCCTGCTTCAGTCCTAGAAGCTTATTTGCCTTACCTCCTGATGGAAGCTCCCTCATGCTTGAATCTCTACAATTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTCGATGTGCGGTCAAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCGGGTGGTAGGCAGGCGAGCACATCTAATAGCTTTGGCCGGGACTCGCATGCTTTGCGTTGTAAAAGAAAAGTCGGTAAACGAGGTCGAATGGCACCTTTCGTTTTTCGTTTCACCCTTTGA 1764 43.25 MDLAVTVELQKSVDFQLGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKSISLNKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWETMVPSRKRTCVNRPKQSPVEKLTKDLYSILHEQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEVYSPHSATVLVCSDNKGMNFPTSRIGKMKSPSGSGVQQGQIKRVRLEDVAKYLTMNDIRDDSHYESFQILGNHNSPLCDADINDIINFGEFAKQLTNEEQQQLMKYLPQVDIAELPETLKSMFESPYFKENVTSFQQLLREGVFDFSFLGTKIEDCKTLKRLVLYNSSKSKWVERYQQLTVRADFMKCKNGSKGSFLPNANASVSSNFMNVKRLRESYNQNIPEAKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLQFVEESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTSNSFGRDSHALRCKRKVGKRGRMAPFVFRFTL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39895269 39901835 + Maker00038010 Lcy12g1875 649938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1875 587 SMART GATA_3 11 59 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g1875 587 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 317 430 IPR044867 -
Lcy12g1875 587 PANTHER OSJNBB0038F03.10 PROTEIN 14 392 IPR044589 -
Lcy12g1875 587 Gene3D - 17 89 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy12g1875 587 Pfam GATA zinc finger 19 45 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g1875 587 Gene3D - 315 404 IPR038108 -
Lcy12g1875 587 MobiDBLite consensus disorder prediction 540 562 - -
Lcy12g1875 587 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 49 - -
Lcy12g1875 587 CDD ZnF_GATA 19 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g1875 587 MobiDBLite consensus disorder prediction 540 563 - -
Lcy12g1875 587 Pfam Asx homology domain 310 389 IPR028020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1875 Lcy-Chr12:39895269 Lcy6g2148 Lcy-Chr6:45407409 2.05E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19293 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1875 - - - 0.0