Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1875 ATGGACCTTGCTGTCACTGTGGAGTTACAAAAGAGTGTTGATTTTCAGCTTGGCACTCCCCTTTGGCGTAATGGGCCTCCCGACAAACCGGTATTATGCAATGCATGTGGGTCCCGATGGAGGACAAAGGGAACACTTGCAAACTATACCCCTTTGCATGCTCGGGCTGATCCTGATGAATATGAAGATCACAGGGTTTCCAGGGTGAAGAGCATTTCATTAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGATGGACGATTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTTGATGAAGACACAAGCAATAGATCCAGTTCTGGATCAGCAATATCTAATCCTGAAAGCTGTGCCCATTTTAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGACCATGGTGCCTTCCAGGAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATTTTGCATGAGCAGAGATCTTCCTATTTCTCCGAAGCTTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCGGTTTCAGTTGATAACAAACAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCAACTGTTCTTGTATGTAGTGACAACAAGGGTATGAATTTTCCAACATCTAGGATTGGAAAGATGAAGAGTCCTTCTGGATCAGGGGTACAACAAGGACAAATTAAAAGGGTAAGACTAGAAGATGTGGCTAAGTACTTAACTATGAATGATATCAGGGACGATTCTCATTACGAAAGTTTTCAAATTCTCGGAAACCATAACTCGCCCTTATGTGATGCAGATATAAATGACATTATAAACTTTGGCGAGTTTGCGAAACAACTAACAAATGAGGAACAACAGCAATTAATGAAGTATCTACCACAGGTTGATATCGCTGAACTTCCTGAGACCCTCAAGAGCATGTTTGAGAGCCCCTATTTCAAGGAGAATGTAACTTCCTTCCAACAACTGCTTAGGGAGGGCGTTTTCGATTTCTCCTTCCTTGGGACAAAGATCGAAGACTGCAAGACTCTGAAAAGGCTTGTATTATATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCAGCAACTGACGGTTAGGGCTGATTTTATGAAATGTAAAAATGGTAGCAAAGGATCTTTTCTTCCCAATGCCAACGCCTCGGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCCTGCTTCAGTCCTAGAAGCTTATTTGCCTTACCTCCTGATGGAAGCTCCCTCATGCTTGAATCTCTACAATTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTCGATGTGCGGTCAAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCGGGTGGTAGGCAGGCGAGCACATCTAATAGCTTTGGCCGGGACTCGCATGCTTTGCGTTGTAAAAGAAAAGTCGGTAAACGAGGTCGAATGGCACCTTTCGTTTTTCGTTTCACCCTTTGA 1764 43.25 MDLAVTVELQKSVDFQLGTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYEDHRVSRVKSISLNKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWETMVPSRKRTCVNRPKQSPVEKLTKDLYSILHEQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEVYSPHSATVLVCSDNKGMNFPTSRIGKMKSPSGSGVQQGQIKRVRLEDVAKYLTMNDIRDDSHYESFQILGNHNSPLCDADINDIINFGEFAKQLTNEEQQQLMKYLPQVDIAELPETLKSMFESPYFKENVTSFQQLLREGVFDFSFLGTKIEDCKTLKRLVLYNSSKSKWVERYQQLTVRADFMKCKNGSKGSFLPNANASVSSNFMNVKRLRESYNQNIPEAKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLQFVEESSDQDLLLDVRSNSSFPQAELLHPTSHSGGRQASTSNSFGRDSHALRCKRKVGKRGRMAPFVFRFTL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39895269 39901835 + Maker00038010 Lcy12g1875 649938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1875 587 SMART GATA_3 11 59 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g1875 587 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 317 430 IPR044867 -
Lcy12g1875 587 PANTHER OSJNBB0038F03.10 PROTEIN 14 392 IPR044589 -
Lcy12g1875 587 Gene3D - 17 89 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy12g1875 587 Pfam GATA zinc finger 19 45 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g1875 587 Gene3D - 315 404 IPR038108 -
Lcy12g1875 587 MobiDBLite consensus disorder prediction 540 562 - -
Lcy12g1875 587 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 49 - -
Lcy12g1875 587 CDD ZnF_GATA 19 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy12g1875 587 MobiDBLite consensus disorder prediction 540 563 - -
Lcy12g1875 587 Pfam Asx homology domain 310 389 IPR028020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1875 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1875 Lcy-Chr12:39895269 Lcy6g2148 Lcy-Chr6:45407409 2.05E-229 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1431 . 81 374 C2C2-Gata Transcription Factor Family AT5G25830 52.9 1.4e-69 260.8
Lcy6g0914 . 13 262 C2C2-Gata Transcription Factor Family AT3G50870 52.3 2.8e-37 153.3
Lcy6g0944 . 99 372 C2C2-Gata Transcription Factor Family AT3G51080 50.7 2.0e-54 210.3
Lcy1g0653 . 112 288 C2C2-Gata Transcription Factor Family AT4G36240 51.9 9.7e-41 164.5
Lcy12g1875 . 19 543 C2C2-Gata Transcription Factor Family AT4G17570 50.1 2.9e-122 436.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19293 None None None None Lcy TF