Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1876 ATGGAGCTCTCAGTTAAATGTGGCTTTTTTGGTTGCCTGTTGATTGTGCTCTTGCCTGTGCTTTGCTCCTCTCAAGACAATTTTGTCTACTCTAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGAACCCCATCTGGAGCTTGTGGATTTGGTGAATTCGGAAGGACTGTCAACGATGGCAATGTTGCTGCAGTTTCCTACCTATATAGAAATGGTTCTGGTTGTGGTGCATGCTATCAGGTTAGGTGCACCAATCCAACATATTGTAGTGAAAATGGAGCCTATGTAGTGGTGACTGACCATGGTGAAGGAGATTACACTGACTTTATCTTGAGCCCACGTGCCTATGCAAAATTGGCACATCCAAACACAGCCCTACAATTGTTCTCTTATGGTGTGGTTGATGTAGAATTCAGAAGGGTTTCTTGCCAATACCCTAATTACAACACTGTCAAATTCAAGGTCCAAGAGCATAGTAGATATCCCGACTACTTGGCCATTGTCATCATCTATGTCGCTGGCAAAAACGACATCACCGCTGTTGAATTGTGGCAGGAGGATTGCAAAGAATGGAAGGGAATGAGGAGATCCCACGGAGCTGTTTGGGACATGGAAAACCCACCTAAAGGAGACATAAAGCTGAGGTTCCAAGTGAGTGGAAGCGTGGGATATGGAAGGTGGGTGGTGGCAAGCAATGCCCTCCCAAGTTACTGGAAGGCAGGAGTTGCTTATGACACAGACATTCACCTCTATTAA 759 45.59 MELSVKCGFFGCLLIVLLPVLCSSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPTYCSENGAYVVVTDHGEGDYTDFILSPRAYAKLAHPNTALQLFSYGVVDVEFRRVSCQYPNYNTVKFKVQEHSRYPDYLAIVIIYVAGKNDITAVELWQEDCKEWKGMRRSHGAVWDMENPPKGDIKLRFQVSGSVGYGRWVVASNALPSYWKAGVAYDTDIHLY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39908175 39910085 - Maker00038210 Lcy12g1876 649939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1876 252 Gene3D - 145 248 IPR036749 -
Lcy12g1876 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Lcy12g1876 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Lcy12g1876 252 PANTHER EXPANSIN-B3 12 250 - -
Lcy12g1876 252 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
Lcy12g1876 252 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Lcy12g1876 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lcy12g1876 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Lcy12g1876 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576(InterPro)
Lcy12g1876 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
Lcy12g1876 252 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Lcy12g1876 252 Gene3D - 20 144 IPR036908 -
Lcy12g1876 252 Pfam Lytic transglycolase 66 138 IPR009009 -
Lcy12g1876 252 Pfam Expansin C-terminal domain 152 236 IPR007117 -
Lcy12g1876 252 CDD DPBB_EXLB_N 29 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1876 Lcy-Chr12:39908175 Lcy12g1907 Lcy-Chr12:40370292 5.89E-72 dispersed
Lcy12g1876 Lcy-Chr12:39908175 Lcy3g0798 Lcy-Chr3:28901480 4.36E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1876 - - - 0.0