Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1881 ATGGATTTCTCCGAGCAAGATGTAGATATATTCGGCGAAGAGTTCGAAAACGAAGACGACAACAACAACAACAACGACAACGACCACCGTGACCGTGATGCTGCTCGCTCCTCGTCTCAATCTTCGTCCTCTTCCGACTCCTCCTCTTCTTCGGATTCCTCGTCGTCCAATGCTAGCGAGGGAGGCGAGAGCAGTAGTGGAGGTAGTGGGAGTGCGAGTAGTGCTGAAGAGGAAGACGAGGAAAATGGCGAAGAAGTACAGCAGAATTCAGGCAGGGGTTATCGTGGGTATGAGGATAGAGATCTGTTTGGCTCTGATAATGAGGATTATTGTAAAACACTTGCTGTTAGTCCTTATCCAGTTCCAGTCTTACCTGCAATAAGGAATAATAACAACCATGCTAGAGGAACATTTGGGCGAGGTCGTTGGGGGAATGATAGAGGATCAGGTCTCCTTCCACGGCCTGGACCATTTCCTCAAAGGCATGGTTTTGGTGGCTATGGATCAAAGTTTTCAAATGGCCGTCATGATGAACGATTTGTTTCAGACATGAAGCTTACTAAAAGTGAAGAAACACTGGCGAGAAAGTGTATTGCTTTTCAGGAGCCTTGTGAGCTTGCTTGCTATAGTCGTGTTGAAGGTGGAGATGTCTACTTTGATGACCGCAGCTTGAGACTGTTTAAGCGCTTTATTACTGAAGATATTGGAGCTGATTTGAACGAAGGTTTTGACACTTTTATTGAAAAGAAAGACTTAGGTTCTCAGGGTTTTGGTGACCTCCTCGCCTGCGTTAGGGCCAAAAACATCCCTCTTCAAAACATTCATTTTGTGACTTTCCGTAACAATCTTAACAAGATATTGGCTACTGCTTATATTCGTCATGAGCCTTGGGAAATGGGTGTGCATAAAAGAAATGGTGTTGTGTACCTAGATGTGCATAAATTACCCGAAAGACCGCAAAGTGAAATGGAGCGACGAAGGTGCTATTGGGGTTACTGTTTTGAGAGCCTTGCTACCGAGGATCCAAGAAGAGGTGATGGAGAAGGGATCCATCATGTAGATGCAAATGCTGAATATTGTGCTGTGATTAAAACGAAATTAGGTGCTCATCGCATTCTGATGGGTGCTGAAATGGATTGCTGTGATTCAACTGATGAGGGAAGGAGGTTTTATGTTGAACTAAAGACAAGTCGTGAGTTGGATCAGCGTACTGAAGAAAGATATGAGAGAGAGAAATTGCTTAAATTTTGGATACAATCATTCTTAGCTGGTGTACCATATATCGTTATTGGGTTCAGGAATGATGCTGGCCAACTTGTCCGCACGGAAAGATTGAGAACTAAGGACATAACACAAAGAGTGAAGATGAAAAACTATTGGCAGGGAGGAGTCTGTCTGGCCTTTGCTGATGAAGTGTTATGCTGGCTTTATGGAACAGTCAAAGAAAATGAAGATTACATATTGCAATTTGCACATCCTTTCACTCGTTTAGAGCTTCTTCAAGCCTCCTCATGCCCAGATGCTATCACTCATCACATTGAGCTGTTGTAG 1551 43.78 MDFSEQDVDIFGEEFENEDDNNNNNDNDHRDRDAARSSSQSSSSSDSSSSSDSSSSNASEGGESSSGGSGSASSAEEEDEENGEEVQQNSGRGYRGYEDRDLFGSDNEDYCKTLAVSPYPVPVLPAIRNNNNHARGTFGRGRWGNDRGSGLLPRPGPFPQRHGFGGYGSKFSNGRHDERFVSDMKLTKSEETLARKCIAFQEPCELACYSRVEGGDVYFDDRSLRLFKRFITEDIGADLNEGFDTFIEKKDLGSQGFGDLLACVRAKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPERPQSEMERRRCYWGYCFESLATEDPRRGDGEGIHHVDANAEYCAVIKTKLGAHRILMGAEMDCCDSTDEGRRFYVELKTSRELDQRTEERYEREKLLKFWIQSFLAGVPYIVIGFRNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFAHPFTRLELLQASSCPDAITHHIELL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39997657 40004529 + Maker00038013 Lcy12g1881 649944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1881 516 MobiDBLite consensus disorder prediction 1 101 - -
Lcy12g1881 516 MobiDBLite consensus disorder prediction 1 21 - -
Lcy12g1881 516 PANTHER DOM-3 RELATED 1 513 IPR039039 GO:0000956(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0034353(PANTHER)|GO:0090305(PANTHER)|GO:0110155(PANTHER)
Lcy12g1881 516 Pfam RAI1 like PD-(D/E)XK nuclease 201 503 IPR013961 -
Lcy12g1881 516 MobiDBLite consensus disorder prediction 22 36 - -
Lcy12g1881 516 MobiDBLite consensus disorder prediction 37 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1881 K14845 - - csv:101211450 893.264
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g565 . . . . . . . . . . . . . . . . Cpe05g00213 . . . . . . . . . . . . . . Cone8ag0435 Cone12ag0420 . . . . . . Blo03g00461 . . . . . . . Sed01g4058 . . . . . . . . Bhi05g00572 Tan07g1905 Cmetu04g0109 Lac11g2346 Hepe06g1720 . Lcy12g1881 Cla09g01204 Cam09g1271 Cec09g1285 Cco09g1319 . . Cre09g1231 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008291 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 3 1 2 35