Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1885 ATGGGTTGTTTCTTCAATTTTAATCGCAAAAAGAAGATCAAGAGAGGAGCGGGATCGGCTAAGGAACTGAATCACAGGAATAAATCGGATCGTGTGATTGAAGCATTGGAAACTTTGCCTACGCCCCGGAGCATACCTGAGTTGTACAAAGAGAAGGAGCATAGTCTGAGGGCCTTCACTCTCGAAGAGCTCAAAATTGCGACTAATGGGTTCAGCAGGTCGCTTAGGATTGGAGAAGGGGGCTTTGGGAGTGTGTATAAGGGGAAATTAAGGCTTGACGGTGATCAGGGAGAGGAAATCATAGTTGCCATCAAGAGGCTTAAGCCAGATAGCTCACAGGGTCATAAACAATGGCTTGCAGAAGTTCAATTTCTTGGTGTTGTTAGTCATCCAAACCTGGTAAAACTTCTGGGATACTGTTCAGAAGATGGAGAAAGAGGGATCCAACGACTGTTAGTCTATGAATTCATGTCTAACGGAAGCCTAGAAGATCATCTCTTTAGAAGGAGTACGACTCTTTTGACTTGGAAAACTAGGCTACAGATTATCCTTGGTGCAGCTCAAGGATTGGCTTATCTACATGAAGGATTAGAAGTCCGGGTGATATATCGTGACTTCAAATCATCAAATGTGCTGTTGGATGAAGAATTCTCTCCAAAACTTTCGGACTTTGGTCTTGCTCGAGAAGGGCCAACGGGTGATCGCACGCATGTGTCCACCGCAGTGGTTGGGACATATGGATATGCAGCACCCGAATATGTTGTCACAGGACATCTAACAATGCAAAGTGATATATGGAGTTTTGGAGTAGTGCTTTATGAGATCCTCACAGGCAGGCGGGCTCTCGAAAGAAACCGCCCGACGGTGGAGCAAAAGCTACTGGAGTGGGTGAAGCAGTTTCCTGCAAACAGCAAAAAGTTCAAGACAATAATAGATCCTCGACTTCAAAACCAGTATAACCTAGATGCGGCTCGAAAAGTTGCCAACTTAGCCGATCAATGCCTTAATAAGACTGCAAGAGATCGGCCAACGATGTCGAAAATTGTTGAAATCCTGAAGCAAGCACTAGAAGAGTCAGAGGAGAGTGTTTAG 1092 44.96 MGCFFNFNRKKKIKRGAGSAKELNHRNKSDRVIEALETLPTPRSIPELYKEKEHSLRAFTLEELKIATNGFSRSLRIGEGGFGSVYKGKLRLDGDQGEEIIVAIKRLKPDSSQGHKQWLAEVQFLGVVSHPNLVKLLGYCSEDGERGIQRLLVYEFMSNGSLEDHLFRRSTTLLTWKTRLQIILGAAQGLAYLHEGLEVRVIYRDFKSSNVLLDEEFSPKLSDFGLAREGPTGDRTHVSTAVVGTYGYAAPEYVVTGHLTMQSDIWSFGVVLYEILTGRRALERNRPTVEQKLLEWVKQFPANSKKFKTIIDPRLQNQYNLDAARKVANLADQCLNKTARDRPTMSKIVEILKQALEESEESV 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40047851 40050942 + Maker00038039 Lcy12g1885 649948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1885 363 PIRSF ILK 50 362 - -
Lcy12g1885 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy12g1885 363 Gene3D Phosphorylase Kinase; domain 1 45 156 - -
Lcy12g1885 363 PANTHER OS01G0588500 PROTEIN-RELATED 50 356 IPR050823 -
Lcy12g1885 363 SUPERFAMILY Protein kinase-like (PK-like) 54 354 IPR011009 -
Lcy12g1885 363 CDD STKc_IRAK 77 354 - -
Lcy12g1885 363 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 157 363 - -
Lcy12g1885 363 Gene3D Transferase(Phosphotransferase) domain 1 157 363 - -
Lcy12g1885 363 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524(InterPro)
Lcy12g1885 363 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 44 156 - -
Lcy12g1885 363 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy12g1885 363 Pfam Protein tyrosine and serine/threonine kinase 76 352 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1885 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1885 Lcy-Chr12:40047851 Lcy8g1802 Lcy-Chr8:44440574 5.61E-122 dispersed
Lcy11g1818 Lcy-Chr11:41955507 Lcy12g1885 Lcy-Chr12:40047851 2.84E-161 wgd
Lcy12g1885 Lcy-Chr12:40047851 Lcy6g2172 Lcy-Chr6:45765198 1.49E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65533 None None None None Lcy PK