Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1914 ATGGAGATTGTGAAGATATTATTGGTTGTAATATTTGGTGTTGTCTTGCATGGGCTTGAGAGTTTAGGTGATGATGGACCATTGGTTTTTGACTATTACAAAGAAACATGCCCCTTTGTCGAAGATATCGTTCGTCGACAAGTCGAGAATGCAGTGCTCAAAGATCCTCGAATGGCTGCCTCACTCCTTCGCTTGCATTTTCATGATTGTTTTGTTATGGGATGCGATGCATCAGTTCTTCTAGACAGCAATGACGAGATGTTGAGTGAAAAACAAGCAACTCCAAACTTAAACTCTCTTCGCGGTTTCAATGTTATTGATGAGATAAAATACATATTGGAAGAAGCTTGTCCTTACATTGTTTCTTGTGCTGATATTTTGACCATTGCTGCTCGTGATGCTGTTGTACTTGTATTATTCTCTCTTTTCCTATTGTTCTTTTATTTTTATTTTCTTTTGACGTATATAAAAGACTCCCTGAAAGCAAGCTTTGATGGAGCCAACAAATACATTCCTTCTCCCAATTCCTCTCTTGAAACCCTAATTGCCAATTTTCAAGAACAGGGCCTTGATGTTGGAGACTTGGTTGCTCTATCAGGCCAAGATCAGAGGATAGCACCCTTAGATTTTGGGACACCTGCAAGGTTTGACAACCACTATTTCCTCAACCTTCTTAAAGGCAAAGGGCTGTTGGGGTCTGACAATGTGCTCATAACCCAAGACCATGAAGGCCAAATTAGAAGACAAGTTTGGAGCTATGCCTCTGACCAAACCCTTTTCTTTGCTTCCTTTGTTAAGTCCATTGTCAAGATGGGGAACATCAATGTCCTCACTGCCCAACAA 843 40.57 MEIVKILLVVIFGVVLHGLESLGDDGPLVFDYYKETCPFVEDIVRRQVENAVLKDPRMAASLLRLHFHDCFVMGCDASVLLDSNDEMLSEKQATPNLNSLRGFNVIDEIKYILEEACPYIVSCADILTIAARDAVVLVLFSLFLLFFYFYFLLTYIKDSLKASFDGANKYIPSPNSSLETLIANFQEQGLDVGDLVALSGQDQRIAPLDFGTPARFDNHYFLNLLKGKGLLGSDNVLITQDHEGQIRRQVWSYASDQTLFFASFVKSIVKMGNINVLTAQQ 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40422297 40424329 + Maker00038267 Lcy12g1914 649977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1914 281 PRINTS Haem peroxidase superfamily signature 209 224 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 SUPERFAMILY Heme-dependent peroxidases 28 280 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 Gene3D - 31 171 - -
Lcy12g1914 281 Gene3D Peroxidase, domain 2 172 201 - -
Lcy12g1914 281 Pfam Peroxidase 201 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 Pfam Peroxidase 44 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 Gene3D - 272 281 - -
Lcy12g1914 281 ProSiteProfiles Plant heme peroxidase family profile. 27 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 PRINTS Plant peroxidase signature 266 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Lcy12g1914 281 PANTHER PEROXIDASE 72-RELATED 202 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy12g1914 281 Gene3D Peroxidase, domain 2 202 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1914 Lcy-Chr12:40422297 Lcy1g0670 Lcy-Chr1:5730655 1.62E-67 dispersed
Lcy12g1914 Lcy-Chr12:40422297 Lcy6g0931 Lcy-Chr6:9470773 1.35E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1914 K00430 - csv:116402797 394.815