Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g1939 | ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGACCTGATTTCAACCTTCACCACCAACATCATCAGCAGCAGCAGCAACAGCAACATCCCGACTCTCAATCTCGTCATGACGACGAATCCCATCAACCGTTGGAATTCGTCGCCGCCCCCGCCACCGATATGGTGGCCTCTCGCCGCCCGCGCGGCCGCCCACCGGGTTCCAAAAACAGGCCGAAGCCCCCGGTTATCATAACCCGGGAGAGCGCCAATACCCTACGAGCCCACATCCTTGAGGTCGGCAACGGCTGCGACGTCTTCGATAGCATCGCCACCTACGCCCGCCGCCGACAGCGGGGGATCTGCATCTTGAGTGGCAGCGGAATGGTGACGAATGTCAACTTGCGGCAACCGACGGCTGCGGGCGCCGTGTTAACCCTACAAGGTAGGTTTGAGATACTATCGCTGACTGGATCTTTCCTGCCTCCGCCTGCTCCTCCCGGAGCCACCAGTTTGACGATATACTTGGCTGGAGCGCAAGGCCAAGTGGTCGGTGGCAACGTCGTCGGGGAGCTGGTGGCGGCGGGGCCAGTAACAGTCATCGCCGCATCGTTTACAAACGTAGCGTACGAGAGACTGCCACTGGAAGAACAAGAACAAGATCAAGAACAAGAACAAGATCAACTTCAGATGCAGCCACCAACGTCTCAGGGCGGCGGAGGCGGCAGCGGCGGTAACAATAACCCATTTCCAGATCCATCTACTGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAATCAAATTCAGCTACCATTCTGA | 816 | 56.25 | MAGLDLGNRYIHQLQRPDFNLHHQHHQQQQQQQHPDSQSRHDDESHQPLEFVAAPATDMVASRRPRGRPPGSKNRPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVTNVNLRQPTAAGAVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGAQGQVVGGNVVGELVAAGPVTVIAASFTNVAYERLPLEEQEQDQEQEQDQLQMQPPTSQGGGGGSGGNNNPFPDPSTGLPFFNLPLNMQNQIQLPF | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 40759154 | 40759969 | + | Maker00038047 | Lcy12g1939 | 650002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g1939 | 271 | PIRSF | ESCAROLA | 7 | 269 | IPR014476 | GO:0003680(InterPro) | |
Lcy12g1939 | 271 | CDD | DUF296 | 91 | 176 | IPR005175 | - | |
Lcy12g1939 | 271 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 91 | 203 | IPR005175 | - | |
Lcy12g1939 | 271 | ProSiteProfiles | PPC domain profile profile. | 87 | 223 | IPR005175 | - | |
Lcy12g1939 | 271 | MobiDBLite | consensus disorder prediction | 222 | 258 | - | - | |
Lcy12g1939 | 271 | MobiDBLite | consensus disorder prediction | 22 | 80 | - | - | |
Lcy12g1939 | 271 | FunFam | AT-hook motif nuclear-localized protein | 90 | 217 | - | - | |
Lcy12g1939 | 271 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 87 | 216 | - | - | |
Lcy12g1939 | 271 | Gene3D | - | 90 | 225 | - | - | |
Lcy12g1939 | 271 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 29 | 263 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy12g1939 | 271 | MobiDBLite | consensus disorder prediction | 214 | 258 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1939 | Lcy-Chr12:40759154 | Lcy13g0544 | Lcy-Chr13:6867866 | 5.77E-92 | dispersed | |
Lcy11g1856 | Lcy-Chr11:42349531 | Lcy12g1939 | Lcy-Chr12:40759154 | 1.11E-94 | wgd | |
Lcy12g1939 | Lcy-Chr12:40759154 | Lcy6g2215 | Lcy-Chr6:46493877 | 2.14E-97 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g1939 | - | - | - | 0.0 |