Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1939 ATGGCTGGTCTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGACCTGATTTCAACCTTCACCACCAACATCATCAGCAGCAGCAGCAACAGCAACATCCCGACTCTCAATCTCGTCATGACGACGAATCCCATCAACCGTTGGAATTCGTCGCCGCCCCCGCCACCGATATGGTGGCCTCTCGCCGCCCGCGCGGCCGCCCACCGGGTTCCAAAAACAGGCCGAAGCCCCCGGTTATCATAACCCGGGAGAGCGCCAATACCCTACGAGCCCACATCCTTGAGGTCGGCAACGGCTGCGACGTCTTCGATAGCATCGCCACCTACGCCCGCCGCCGACAGCGGGGGATCTGCATCTTGAGTGGCAGCGGAATGGTGACGAATGTCAACTTGCGGCAACCGACGGCTGCGGGCGCCGTGTTAACCCTACAAGGTAGGTTTGAGATACTATCGCTGACTGGATCTTTCCTGCCTCCGCCTGCTCCTCCCGGAGCCACCAGTTTGACGATATACTTGGCTGGAGCGCAAGGCCAAGTGGTCGGTGGCAACGTCGTCGGGGAGCTGGTGGCGGCGGGGCCAGTAACAGTCATCGCCGCATCGTTTACAAACGTAGCGTACGAGAGACTGCCACTGGAAGAACAAGAACAAGATCAAGAACAAGAACAAGATCAACTTCAGATGCAGCCACCAACGTCTCAGGGCGGCGGAGGCGGCAGCGGCGGTAACAATAACCCATTTCCAGATCCATCTACTGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAATCAAATTCAGCTACCATTCTGA 816 56.25 MAGLDLGNRYIHQLQRPDFNLHHQHHQQQQQQQHPDSQSRHDDESHQPLEFVAAPATDMVASRRPRGRPPGSKNRPKPPVIITRESANTLRAHILEVGNGCDVFDSIATYARRRQRGICILSGSGMVTNVNLRQPTAAGAVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGAQGQVVGGNVVGELVAAGPVTVIAASFTNVAYERLPLEEQEQDQEQEQDQLQMQPPTSQGGGGGSGGNNNPFPDPSTGLPFFNLPLNMQNQIQLPF 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40759154 40759969 + Maker00038047 Lcy12g1939 650002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1939 271 PIRSF ESCAROLA 7 269 IPR014476 GO:0003680(InterPro)
Lcy12g1939 271 CDD DUF296 91 176 IPR005175 -
Lcy12g1939 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 203 IPR005175 -
Lcy12g1939 271 ProSiteProfiles PPC domain profile profile. 87 223 IPR005175 -
Lcy12g1939 271 MobiDBLite consensus disorder prediction 222 258 - -
Lcy12g1939 271 MobiDBLite consensus disorder prediction 22 80 - -
Lcy12g1939 271 FunFam AT-hook motif nuclear-localized protein 90 217 - -
Lcy12g1939 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 216 - -
Lcy12g1939 271 Gene3D - 90 225 - -
Lcy12g1939 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 263 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy12g1939 271 MobiDBLite consensus disorder prediction 214 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1939 Lcy-Chr12:40759154 Lcy13g0544 Lcy-Chr13:6867866 5.77E-92 dispersed
Lcy11g1856 Lcy-Chr11:42349531 Lcy12g1939 Lcy-Chr12:40759154 1.11E-94 wgd
Lcy12g1939 Lcy-Chr12:40759154 Lcy6g2215 Lcy-Chr6:46493877 2.14E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1939 - - - 0.0