Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g1941 | ATGGATTCACTTGAAACTCCTCCGCCACTTTCAGCACCGTCCAACATGGCGGTCGGAGGACCGACGGCGTATTCTACGGCCATGTCCAACTCCAACAACAATGCCTCTTCCGCGATTGGTCTCAATCAGGCCACGACTCAGATGATGCCGCCTTCTGCGCTCTTTCCGTTTAACTCCGTGATCGCCCCTGCATCCGTGCCTTTGGATTCTTTGAACGTTTCTCCCTATGACGGATCGCATTCCGGGAGTTTCAACGTTGATTCGGGGAAGAAGAAGAGAGGCCGGCCGAGGAAGTACGCGCCTGATGGTGGTAACATTGCCTTGGCTTTGGCGCCTACAACTGTTGCGTCTTCTGTTGGTCACGGGGATTTGAGCGGCACTCCTGATTCGGACCAGCCGGCGAAGAAAGCGAGGGGAAGGCCACCGGGCTCGGGGAAGAAACAGATGAATGCTCTTGGTTCAGGCGGCATTGGTTTTACTCCTCACGTTGTATTGGCGAAGCCTGGAGAGGATGTAGCAGCCAAAATTCTATCCTTCTCACAGCAAGGACCACGAACTGTCTTTATTCTCTCTGCAAATGGTACCATCAGTAATGCTACCCTTCGACACCCGGCTACCTCTGGTGGTTCTGTGACATATGAGGGCCAGTATGAGATCATCTCTCTGTCAGGGTCCTTTTTGCTCTCGGAGAATAATGGAACTCGAAGTAGAACAGGTGGTTTGAGTGTGTTGCTGTCTGGGTCAGACGGACAAGTTCTTGGTGGTGGAGTTGCAGGAATGCTAATGGCAGGTTCTCAAGTGCAGGTGATTGTGGGAAGTTTTCTCGAGGAGGATAAAAAATCCAACACAAGTATGCTGAATTCTGGATCTTCTGCTGCGCCATCCCAAATGATAAACTTTGGTGGTGCAGCAGCCGCAGCAGCCAGCCCTCCGTCGCTAGGGGCATCGAGCGGCGAGTCATCTGGGGAGAACGGAGACAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAACAACACCAGCCAATCGATCCACAATATGCAGATGTACCACCAACTATGGGCAAGCCAAACGCAGCAGTGA | 1083 | 52.35 | MDSLETPPPLSAPSNMAVGGPTAYSTAMSNSNNNASSAIGLNQATTQMMPPSALFPFNSVIAPASVPLDSLNVSPYDGSHSGSFNVDSGKKKRGRPRKYAPDGGNIALALAPTTVASSVGHGDLSGTPDSDQPAKKARGRPPGSGKKQMNALGSGGIGFTPHVVLAKPGEDVAAKILSFSQQGPRTVFILSANGTISNATLRHPATSGGSVTYEGQYEIISLSGSFLLSENNGTRSRTGGLSVLLSGSDGQVLGGGVAGMLMAGSQVQVIVGSFLEEDKKSNTSMLNSGSSAAPSQMINFGGAAAAAASPPSLGASSGESSGENGDSPLNNRHPGMFNNTSQSIHNMQMYHQLWASQTQQ | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 40769394 | 40773618 | - | Maker00038224 | Lcy12g1941 | 650004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g1941 | 360 | CDD | DUF296 | 160 | 274 | IPR005175 | - | |
Lcy12g1941 | 360 | ProSiteProfiles | PPC domain profile profile. | 155 | 296 | IPR005175 | - | |
Lcy12g1941 | 360 | SMART | AT_hook_2 | 135 | 147 | IPR017956 | GO:0003677(InterPro) | |
Lcy12g1941 | 360 | SMART | AT_hook_2 | 90 | 102 | IPR017956 | GO:0003677(InterPro) | |
Lcy12g1941 | 360 | MobiDBLite | consensus disorder prediction | 18 | 37 | - | - | |
Lcy12g1941 | 360 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Lcy12g1941 | 360 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 32 | 328 | IPR039605 | GO:0003680(InterPro) | |
Lcy12g1941 | 360 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 159 | 277 | - | - | |
Lcy12g1941 | 360 | MobiDBLite | consensus disorder prediction | 76 | 104 | - | - | |
Lcy12g1941 | 360 | MobiDBLite | consensus disorder prediction | 309 | 341 | - | - | |
Lcy12g1941 | 360 | MobiDBLite | consensus disorder prediction | 117 | 152 | - | - | |
Lcy12g1941 | 360 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 161 | 274 | IPR005175 | - | |
Lcy12g1941 | 360 | MobiDBLite | consensus disorder prediction | 313 | 341 | - | - | |
Lcy12g1941 | 360 | Gene3D | - | 161 | 289 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g1658 | Lcy-Chr12:36973309 | Lcy12g1941 | Lcy-Chr12:40769394 | 9.97E-34 | dispersed | |
Lcy12g1941 | Lcy-Chr12:40769394 | Lcy9g2354 | Lcy-Chr9:47824431 | 2.29E-68 | dispersed | |
Lcy12g1941 | Lcy-Chr12:40769394 | Lcy6g2216 | Lcy-Chr6:46500582 | 5.69E-39 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g1941 | - | - | - | 0.0 |