Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1941 ATGGATTCACTTGAAACTCCTCCGCCACTTTCAGCACCGTCCAACATGGCGGTCGGAGGACCGACGGCGTATTCTACGGCCATGTCCAACTCCAACAACAATGCCTCTTCCGCGATTGGTCTCAATCAGGCCACGACTCAGATGATGCCGCCTTCTGCGCTCTTTCCGTTTAACTCCGTGATCGCCCCTGCATCCGTGCCTTTGGATTCTTTGAACGTTTCTCCCTATGACGGATCGCATTCCGGGAGTTTCAACGTTGATTCGGGGAAGAAGAAGAGAGGCCGGCCGAGGAAGTACGCGCCTGATGGTGGTAACATTGCCTTGGCTTTGGCGCCTACAACTGTTGCGTCTTCTGTTGGTCACGGGGATTTGAGCGGCACTCCTGATTCGGACCAGCCGGCGAAGAAAGCGAGGGGAAGGCCACCGGGCTCGGGGAAGAAACAGATGAATGCTCTTGGTTCAGGCGGCATTGGTTTTACTCCTCACGTTGTATTGGCGAAGCCTGGAGAGGATGTAGCAGCCAAAATTCTATCCTTCTCACAGCAAGGACCACGAACTGTCTTTATTCTCTCTGCAAATGGTACCATCAGTAATGCTACCCTTCGACACCCGGCTACCTCTGGTGGTTCTGTGACATATGAGGGCCAGTATGAGATCATCTCTCTGTCAGGGTCCTTTTTGCTCTCGGAGAATAATGGAACTCGAAGTAGAACAGGTGGTTTGAGTGTGTTGCTGTCTGGGTCAGACGGACAAGTTCTTGGTGGTGGAGTTGCAGGAATGCTAATGGCAGGTTCTCAAGTGCAGGTGATTGTGGGAAGTTTTCTCGAGGAGGATAAAAAATCCAACACAAGTATGCTGAATTCTGGATCTTCTGCTGCGCCATCCCAAATGATAAACTTTGGTGGTGCAGCAGCCGCAGCAGCCAGCCCTCCGTCGCTAGGGGCATCGAGCGGCGAGTCATCTGGGGAGAACGGAGACAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAACAACACCAGCCAATCGATCCACAATATGCAGATGTACCACCAACTATGGGCAAGCCAAACGCAGCAGTGA 1083 52.35 MDSLETPPPLSAPSNMAVGGPTAYSTAMSNSNNNASSAIGLNQATTQMMPPSALFPFNSVIAPASVPLDSLNVSPYDGSHSGSFNVDSGKKKRGRPRKYAPDGGNIALALAPTTVASSVGHGDLSGTPDSDQPAKKARGRPPGSGKKQMNALGSGGIGFTPHVVLAKPGEDVAAKILSFSQQGPRTVFILSANGTISNATLRHPATSGGSVTYEGQYEIISLSGSFLLSENNGTRSRTGGLSVLLSGSDGQVLGGGVAGMLMAGSQVQVIVGSFLEEDKKSNTSMLNSGSSAAPSQMINFGGAAAAAASPPSLGASSGESSGENGDSPLNNRHPGMFNNTSQSIHNMQMYHQLWASQTQQ 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40769394 40773618 - Maker00038224 Lcy12g1941 650004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1941 360 CDD DUF296 160 274 IPR005175 -
Lcy12g1941 360 ProSiteProfiles PPC domain profile profile. 155 296 IPR005175 -
Lcy12g1941 360 SMART AT_hook_2 135 147 IPR017956 GO:0003677(InterPro)
Lcy12g1941 360 SMART AT_hook_2 90 102 IPR017956 GO:0003677(InterPro)
Lcy12g1941 360 MobiDBLite consensus disorder prediction 18 37 - -
Lcy12g1941 360 MobiDBLite consensus disorder prediction 1 37 - -
Lcy12g1941 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 328 IPR039605 GO:0003680(InterPro)
Lcy12g1941 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 277 - -
Lcy12g1941 360 MobiDBLite consensus disorder prediction 76 104 - -
Lcy12g1941 360 MobiDBLite consensus disorder prediction 309 341 - -
Lcy12g1941 360 MobiDBLite consensus disorder prediction 117 152 - -
Lcy12g1941 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Lcy12g1941 360 MobiDBLite consensus disorder prediction 313 341 - -
Lcy12g1941 360 Gene3D - 161 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1658 Lcy-Chr12:36973309 Lcy12g1941 Lcy-Chr12:40769394 9.97E-34 dispersed
Lcy12g1941 Lcy-Chr12:40769394 Lcy9g2354 Lcy-Chr9:47824431 2.29E-68 dispersed
Lcy12g1941 Lcy-Chr12:40769394 Lcy6g2216 Lcy-Chr6:46500582 5.69E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1941 - - - 0.0