Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1945 ATGGGGAAGAATATAAAGAAAAGTCCTTTGCACCAACCTAATTTTGGTAACATCCCTTCAACACAACAGCCTCAGCCCCAGCCCCAGGTTTACAACATAAACAAGAATGATTTTCGGAATATTGTTCAGCAGCTGACTGGTTCTTCACAAGAGCCGTCTAGTAGACCACCTCAAATTCCAGCAAAACAACAAAGCTTGAGATTGCAAAGAATACGACCTCCCCCATTAACACCTATAAATCGGCCCCGTGTTCCGCCTCCGGTCCCTGTTTCCACGACCCTGCCACAGATTCCTTATAACAATGGCCAATTCAGGCCTGCACAATATGATCAGTCATCAACAATGTTTCAAGGACAGCCAGCACCTACTCAATTGCCTCAATCAATACCTGCAGACTCAATTTGGCCAAAGACTGCTGATTCCCCAATATCTGCCTATATGCGTTATCTTCAAAGCTCAGCAATAGATTCCCCTGCATTGGGAAACCAGGCTCAGCCGCTGCCACAAGCACAAGTTCCAGGTCAAGTTCAAAACCAAGTGCCTCCCTCTGGTTTACCATCCAACCCAGCTGCCCCCACGCCTCCTAGTACAAATGGTCCTGTACCACCTCTCCCTAATTATCCTCCCATCCAAGCAAACAGTCCTGGAATTTTTCCCTCCCCTTCACAATTCCATGTGTCCTCTCCTTCTGGGTACTTGAATTTGTTATCACCACAGTCACCTTATCCCTTGCTTTCACCTGGAATTCGGTTTCCTCCACCTCTGAGTCCTAATTTTACATTTTCTCCCATGGCTCAACCAGGGATTTTAGGTCCTGGGCCTCATCCTCCGCTTTCTCCTGGCCTTGTATTTCCATTATCTCCATCAGGATTATTCCCCCTAATGAGTCCAAGATGGAGGGAATGGCAGTCCTAG 915 47.21 MGKNIKKSPLHQPNFGNIPSTQQPQPQPQVYNINKNDFRNIVQQLTGSSQEPSSRPPQIPAKQQSLRLQRIRPPPLTPINRPRVPPPVPVSTTLPQIPYNNGQFRPAQYDQSSTMFQGQPAPTQLPQSIPADSIWPKTADSPISAYMRYLQSSAIDSPALGNQAQPLPQAQVPGQVQNQVPPSGLPSNPAAPTPPSTNGPVPPLPNYPPIQANSPGIFPSPSQFHVSSPSGYLNLLSPQSPYPLLSPGIRFPPPLSPNFTFSPMAQPGILGPGPHPPLSPGLVFPLSPSGLFPLMSPRWREWQS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40806959 40807873 - Maker00038064 Lcy12g1945 650008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1945 304 MobiDBLite consensus disorder prediction 75 91 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 257 281 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 1 31 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 45 65 - -
Lcy12g1945 304 Pfam VQ motif 26 50 IPR008889 -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 10 31 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 45 91 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 113 136 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 113 131 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 185 215 - -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 160 221 - -
Lcy12g1945 304 PANTHER PROTEIN HAIKU1 1 301 IPR039612 -
Lcy12g1945 304 MobiDBLite consensus disorder prediction 160 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1945 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1945 Lcy-Chr12:40806959 Lcy9g1718 Lcy-Chr9:42388383 4.04E-14 dispersed
Lcy12g1945 Lcy-Chr12:40806959 Lcy6g2223 Lcy-Chr6:46658583 9.20E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g669 . . . . . . . Bma14g00151 Cmo06g00659 . . . . . Sed02g0116 . . Bhi11g00154 Tan01g2186 Cmetu06g2320 . . Mch10g1650 . Cla10g00161 Cam10g0162 Cec10g0172 Cco10g0171 Clacu10g0163 Cmu10g1012 Cre10g0422 . . . . Lsi07g01200 . Chy04g00089 Cme06g02475 Blo03g00856 Blo19g00187 Bda07g00101 Bda09g00719 Bpe08g00836 Bpe11g00338 . . Sed01g4106 . . Cma06g00651 Cma16g01155 Car06g00581 . . . Bhi05g00503 Tan07g1974 Cmetu04g0986 Lac11g2411 Hepe06g1023 . Lcy12g1945 Cla09g01131 Cam09g1187 Cec09g1199 Cco09g1222 . . Cre09g1148 . Csa03g04612 Chy06g02141 Cme04g00114
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002702 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 3 2 1 57