Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1947 ATGCAATTTGGAAGCGCATACGACCTTCGTGCGCTTGGCCTATGCCGACGAATTGGTGGGAGATTTGTAACGAATTTGGAGGCGTTTCGGGACAAATCAGGCGGAACCGGAGTGGCTGGAGGCTGCACGGACCGAACGGAGTCTGTGGGACTCGGCCTCGGCCAGGCCGAGCAGTGGGGTCGGGCCAAATGCCCGACCCCTTCGGTCTTGACCCGTCCCATTTGCCGGTTTCGCCTCTGGGGTCCATCTCTTAGCCCTATTTCTACCCGGTTGTCCTCGTCAGCTCCTTGTACATCGGATCCTGGCGAGTTTCCCGATTTAATCGGCGATTCATTCTTACAGGTTCCGCTTTCCGTCTGTCTGTCTTCGCATCGCAGCCCAAATTTTGTCTCGCTTCAATCTCCAACCCCATTTCATCTCTTCACCTTTCACCACTTCTCCGGCGGATCCGGATTCGACTCTGAGCTCCGGTCAGTGTATGGAATGACGGACTACCGATTACCTCCGACCATGAATCTCTGGGCGGATGAGAACGCCTCGATGATGGACGCCTTCATGACCACCGATCTGAGTTCCTTCTGGGTCAATCCGCCGCAGCCGCAGCAAATTCCTCAGCCGCCCTATTCCTCTGTTTCCGCCGCGCCGGACACGAGTAAAGCCGTCGGTCAATCGCCGCCGCCGACGTCGGTGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGGCTTCAAGCCTTGATTGAAGGGGCTAACGAGAGCTGGACTTACGCTATCTTCTGGCAGTCCTCGTACGACTACTCCGGCGCCACCGTCTTGGGCTGGGGGGACGGGTACTACAAAGGCGAAGAAGATAAAGGCAAAGAGAAGGCCAAATCGACGACCTCGAAGGCCGAGCAAGAGCATCGTAAGAAGGTACTTCGCGAGCTCAACTCTCTCATTTCTGGTTCTCCTACCTCTGAAGACGACGCCGTCGACGAGGTCGTCACCGACACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCCTTCGTCGCCGGCGTCGGATTGCCGGGACAGGCGTTTTTCGACTCGAACCCTATTTGGGTCGCCGGTTCGGATCGGCTTGCGAGCTCGTTCTGCGAACGGGCTCGTCAGGGTCAGGTTTTCGGGTTGCAGACCATGGTTTGTATTCCGTCGGCGAATGGAGTCGTTGAATTGGGTTCGAGTGAGTTGATTTACCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAACAATCTGGAGGTTGAAACTTGGCCAATTAGTGGTGTTGACCAAGGGGAAAACGACCCGTCTTCGCTTTGGATCAGCGAGCCATCAAACGCCATTGAAATCAAGGACCCTGTCACTGTGAGTAGCAATAACAACAATCCTGTTGCTTCAGCTCCAGCTCCAGCTCCAACTCCAGCTCCCAGCTCCACAAACAGCCAGCCGATTTCCAAAATTACGACAGAGATTGAAAATCCCAAATCGAGTGTTGTAACTGAAACTCCAACCTCTGTTCCTCCTTCCCAAAAGAGCCACCGACAGTCGCAGCCGGTTCACACGCAGAGCTTCTTCACCAGGGAATTGAACTTCTCTGAATTTGGCTACGATAATGGCAGCTTCAAGGATGGGAATTCGCATTCTCTCAAGCCGGAATCCGGCGAGATTCTCAACTTTGGCGAGAGCAAGAGGAGTTCTTATCCCAACACAGATAACTTGCCTTCGGGCAATTCCCAATTTGGAGCGGATGAGAACAAGAAGAAGAGATCCCCCACTTCTCGTGGGAGTAATGAAGAGGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCATCCTCCGGCACCGCGAAATCGGGCGGTGGCATTGGCGATTCCGACCACTCTGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGTGGTTGAGCCGGAGAAGCGGCCTCGCAAACGGGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAAGCTGAGAGGCAGAGGAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGTGATGCAATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGACAAGGAGGATTTGCAGAAGCAATTGGATTCAGTGAAGAAGTTGATGATGCCTAGTAAAGATTCAAGTATATCAAGCTCAAATCAACCCCCACCAGATCAAGACATAAAAGTATCAAACATCCATGGAAATAACAGTGGTATCAAAACCGATATCGACGTGAAGATAATCAGTTGGGACGCCATGATTCGGATCCAATCTAGTAAGAAAAACCATCCCGCTGCGCGGCTGATGGCAGCTTTGGAAGAACTGGACTTGGATATCAACCACGCAAGCATTTCAGTTGTCAATGATCTGATGATCCAACAAGCAACTGTCAAGATGAGTCGATTATACACTCAGGAGCAGCTAACGATAGCTCTATCATCGAAAATAGGCGCAACTCGGTAG 2562 51.56 MQFGSAYDLRALGLCRRIGGRFVTNLEAFRDKSGGTGVAGGCTDRTESVGLGLGQAEQWGRAKCPTPSVLTRPICRFRLWGPSLSPISTRLSSSAPCTSDPGEFPDLIGDSFLQVPLSVCLSSHRSPNFVSLQSPTPFHLFTFHHFSGGSGFDSELRSVYGMTDYRLPPTMNLWADENASMMDAFMTTDLSSFWVNPPQPQQIPQPPYSSVSAAPDTSKAVGQSPPPTSVAVFNQETLQQRLQALIEGANESWTYAIFWQSSYDYSGATVLGWGDGYYKGEEDKGKEKAKSTTSKAEQEHRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVAGVGLPGQAFFDSNPIWVAGSDRLASSFCERARQGQVFGLQTMVCIPSANGVVELGSSELIYQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWISEPSNAIEIKDPVTVSSNNNNPVASAPAPAPTPAPSSTNSQPISKITTEIENPKSSVVTETPTSVPPSQKSHRQSQPVHTQSFFTRELNFSEFGYDNGSFKDGNSHSLKPESGEILNFGESKRSSYPNTDNLPSGNSQFGADENKKKRSPTSRGSNEEGMLSFTSGVILPSSGTAKSGGGIGDSDHSDLEASVIREVESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMPSKDSSISSSNQPPPDQDIKVSNIHGNNSGIKTDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLTIALSSKIGATR 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40825210 40832258 - Maker00038145 Lcy12g1947 650010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1947 853 CDD bHLH_AtAIB_like 663 738 - -
Lcy12g1947 853 Pfam Helix-loop-helix DNA-binding domain 670 716 IPR011598 GO:0046983(InterPro)
Lcy12g1947 853 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 666 715 IPR011598 GO:0046983(InterPro)
Lcy12g1947 853 MobiDBLite consensus disorder prediction 457 525 - -
Lcy12g1947 853 MobiDBLite consensus disorder prediction 563 585 - -
Lcy12g1947 853 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 669 738 IPR036638 GO:0046983(InterPro)
Lcy12g1947 853 MobiDBLite consensus disorder prediction 482 525 - -
Lcy12g1947 853 Pfam Plant bHLH transcription factor, ACT-like domain 776 834 IPR054502 -
Lcy12g1947 853 SMART finulus 672 721 IPR011598 GO:0046983(InterPro)
Lcy12g1947 853 FunFam Transcription factor bHLH13 659 733 - -
Lcy12g1947 853 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 238 418 IPR025610 -
Lcy12g1947 853 MobiDBLite consensus disorder prediction 563 604 - -
Lcy12g1947 853 MobiDBLite consensus disorder prediction 206 227 - -
Lcy12g1947 853 Gene3D - 665 741 IPR036638 GO:0046983(InterPro)
Lcy12g1947 853 MobiDBLite consensus disorder prediction 612 631 - -
Lcy12g1947 853 MobiDBLite consensus disorder prediction 636 676 - -
Lcy12g1947 853 Coils Coil 712 739 - -
Lcy12g1947 853 PANTHER MYC 225 848 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Lcy12g1947 853 MobiDBLite consensus disorder prediction 197 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1947 Lcy-Chr12:40825210 Lcy4g1104 Lcy-Chr4:21769977 9.66E-51 dispersed
Lcy12g1947 Lcy-Chr12:40825210 Lcy6g2225 Lcy-Chr6:46675617 4.94E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19298 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1947 K13422 - csv:101218165 1051.58