Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1954 ATGTTTTCACCTCCACCACCCTTGGAGTTTTCAGATGATGATTCAGGCCCAAATTTTTCACCCCTTGTCATTGCAGTTATTGGAATTCTGGCAAGTGCTTTCCTTCTTATAAGCTATTACACCATCATTTCAAAGTACTGTGGCAACACAGATCGCTTGTCTAGGACTGGAAATGATGACACAAATGAGGAATTTGAAGACAATCACAACCCGACACTTCACGAGCCATGGCATGTGGCCACAACTGGCTTGGATGAGGCACTGATCAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTCTGCCTCAGTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGCATTGATACTTGGCTCAAATCGCACTCCAATTGCCCGTTGTGTCGTGCCAATATCGTCTCTGTCAATGCTTCTTCTCCAGTTCAACTGCCTGCAAGCACTGCAAATCCCATAACTAGCGAGGCCATGCCAGAGACTTCTCAGGCAAATGACAGTGAGACTGTTTCACAACAATCTGGAAGAGGTTTCAGCAATGACGATGTGATGCAAGCAAGTAATTGTGCGAAGAATTCGGTTCGCGCTTTCAGTGACCTTGGAAATCTGGAGAAAAGAGACACTGTCATTGAGCTCAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCATTATCGCCGATGTTCTGCGTCTAAACGAAGATGAGTTTGGAGCCATTGATGAAGCTGAAAGCTCAGGCGATGTTGGATCATCCAAACATTCAATGGGAGATGACAGCAAGTCAAGCCATAGAAAAAGACTCTTACATTGTGTGATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTCATTCACTAGGCATGGAAGAGAACACAGGGGAATTGCCCCTGTCTGA 999 44.34 MFSPPPPLEFSDDDSGPNFSPLVIAVIGILASAFLLISYYTIISKYCGNTDRLSRTGNDDTNEEFEDNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVNASSPVQLPASTANPITSEAMPETSQANDSETVSQQSGRGFSNDDVMQASNCAKNSVRAFSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCSQNHIIIADVLRLNEDEFGAIDEAESSGDVGSSKHSMGDDSKSSHRKRLLHCVMSPVSMKRSFSSGRFSFTRHGREHRGIAPV 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40914873 40915871 + Maker00037843 Lcy12g1954 650017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1954 332 Pfam Ring finger domain 108 151 IPR001841 -
Lcy12g1954 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 160 IPR013083 -
Lcy12g1954 332 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Lcy12g1954 332 SMART ring_2 109 150 IPR001841 -
Lcy12g1954 332 MobiDBLite consensus disorder prediction 273 295 - -
Lcy12g1954 332 CDD RING-H2_EL5-like 108 151 - -
Lcy12g1954 332 MobiDBLite consensus disorder prediction 177 202 - -
Lcy12g1954 332 FunFam RING-H2 finger protein ATL54 84 157 - -
Lcy12g1954 332 SUPERFAMILY RING/U-box 97 157 - -
Lcy12g1954 332 PANTHER RING-H2 FINGER PROTEIN ATL16 4 327 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1954 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1657 Lcy-Chr11:40415232 Lcy12g1954 Lcy-Chr12:40914873 2.56E-32 dispersed
Lcy12g1954 Lcy-Chr12:40914873 Lcy13g0516 Lcy-Chr13:6386440 2.55E-57 dispersed
Lcy12g1954 Lcy-Chr12:40914873 Lcy11g1812 Lcy-Chr11:41901307 2.79E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68