Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1955 ATGAGTCTTGATGCTCTTTCTTCCAATGACTTATTCAACTTCATCATCTACGATACCATCTCCGCGATGCCGAACGCCTCGCACGGCCACCGCGACTCGTCGGACAACGCCTTCTTCTCCGAAGACAAGTGTTTGAAACACGATCAAGATCACCAACAACACGGGTTCGAATTAGGCCTCCCGAAACCCAATTCGGCGGTGTCGAGAAAACGTCGCCCGGGCGAGGGAGAAGGCAACCGGGCGGCCACGGCAGGGCCGTTGCAGCAAGGGAAGAAGAAGAGGAAGAGAAAACCAAAGGTTTGTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCCCTCATGCCAGAATCCTATGTTCAAAGGGGTGATCAAGCATCCATAGTAGGTGGAGCAGTTGAGTTTGTGAAGGAACTTGAGCATCTGCTAACAAGTCTTGAAGCGAAGAAGCTGCAAATTTTACAGCAAGAAGTGGAAGAAGATACAGAAAATCAGATAAACAATGAAGATTCAGTGAGAAGGAAGTTGTTTTCAGTTTCAGCACCATTTGCAACAGTGTTGATGCATTCAGATTATCACAACTGCTCCCAATACTCAACCAAATACACATCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCAAATCTCAGAATCCTCTCAACAAGAACCCACAGACAGCTCTTGAAGCTCATTGCAGGCTTGCAGGCTCTTCGCCTCACTATTCTTCATCTCAATGTCACTGACTTCCACCCATTGGTTCTTTACTCCATCAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCTGTAGATGACATAGCAGCAGCAGCTCATCATATGGTGAGAATAATTGAGGAAGAAGCTGTCTTGTGTTGA 963 46.0 MSLDALSSNDLFNFIIYDTISAMPNASHGHRDSSDNAFFSEDKCLKHDQDHQQHGFELGLPKPNSAVSRKRRPGEGEGNRAATAGPLQQGKKKRKRKPKVCKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLTSLEAKKLQILQQEVEEDTENQINNEDSVRRKLFSVSAPFATVLMHSDYHNCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEEAVLC 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40917430 40920079 - Maker00038003 Lcy12g1955 650018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1955 320 PANTHER MAX DIMERIZATION, MAD 52 312 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy12g1955 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 160 IPR011598 GO:0046983(InterPro)
Lcy12g1955 320 SMART finulus 115 166 IPR011598 GO:0046983(InterPro)
Lcy12g1955 320 CDD bHLH_AtFAMA_like 112 171 - -
Lcy12g1955 320 Coils Coil 157 177 - -
Lcy12g1955 320 MobiDBLite consensus disorder prediction 46 109 - -
Lcy12g1955 320 Pfam Helix-loop-helix DNA-binding domain 110 161 IPR011598 GO:0046983(InterPro)
Lcy12g1955 320 Gene3D - 101 182 IPR036638 GO:0046983(InterPro)
Lcy12g1955 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 175 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1955 Lcy-Chr12:40917430 Lcy13g1533 Lcy-Chr13:34142235 2.88E-61 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19300 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1955 - - - 0.0