Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy12g1963 | ATGAGAAACCATGGCTCTGTTTCATATGAAGAAGAGGAAGATGATGATCATAGTATGAAGAAGAGGAAGAATAATGAGGAAGAAGATCAAGAAGATGAGAAGAAGAAGAAGAAGAAGCAACAGCAAAATAAAGTTGCTTTTTATAAACTCTTTGCTTTTGCTGATTTTTATGACTACTTTCTCATGACTTTTGGCTCTATTGGAGCTTGTATCCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGAAAGCTCATTAATATCATTGGCATGGCTTATCTCTTCCCTGAAGAAGCTGCTCCCAAAGTTGCTAAGTACTCTTTGGATTTTTTATATCTCAGTGTGGCTATACTATTTTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGAGAGCGTCAAGCAGCAAAAATGAGAATGGCATATTTAAGATCCATGTTGAATCAAGACATTAGCCTTTTTGACACTGAAGCTTCAACTGGTGAAGTTATTGCTGCTATAACCAGTGACATTGTTGTTGTTCAAGATGCCATTTCTGAAAAAGTAGGGAACTTTCTGCACTATATAAGCCGGTTTATATCAGGATTCATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACTTTATCTATTGTCCCCTTGATTGCACTTGCTGGTGGTCTCTATGCTTTTGTCACCATTGGTCTTATTGCCAAAGTTCGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGGGAAGAAAGGGCAGTGAACTTATACAAAGGAGCTCTTAAAAAAACCTACAAATATGGTAGAAAAGCTGGTTTGGCTAAGGGACTGGGCCTGGGATCCATGCATTGTGTCCTTTTCTTATCATGGGCTCTGTTAGTTTGGTTCACCAGCATTATTGTTCACAAGAACATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTTGGGCAGGCTGCACCAGACATTTCGGCCTTCGTTCGAGCAAAGGCAGCAGCCTATCCTATCTTTCAGATGATAGAGAGAAACACAGTAAGCAAAAGCAGCTCCAAAACTGGCCGGAAACTAAACAGGCTTGATGGTCATATTCAGTTCAAGGATGTTAATTTCAGCTACCCATCTCGTTCAGATGTAGTTATATTCAATAAGTTATCTCTTGATATTCCTGCTGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGTTCGGGAAAGAGCACGGTCATATCTTTGATCGAACGATTCTACGAACCCCTTTCTGGAGAGATTCTATTAGATGGTAACAACATCAAGGATCTAGACCTCAAGTGGCTTAGGCAGCAAATTGGTTTGGTCAATCAAGAGCCTGCCCTTTTCGCTACAAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCTACTCTCGAGGACATCACACGTGCAGCAAAACTTTCTGAGGCTTTATCATTTATAAACAATCTCCCTGAAAGATTTGAAACTCAGGTTGGTGAGAGAGGGGTCCAATTATCAGGGGGACAAAAACAAAGGATTGCAATATCTCGTGCAATTGTTAAGAATCCATCGATCCTATTGTTAGATGAAGCAACAAGTGCACTAGATGCAGAATCTGAGAAGAGTGTTCAAGAGGCACTGGACCGTGTCATGGTTGGACGAACAACTGTAGTGGTGGCGCATCGCCTATCTACCATAAGGAATGCTGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCATGATGAGCTCATTTCAAAGCCAGACAGTGTCTATGCATCACTTGTCCAGTTCCAAGAAACCGCATCGCTGCAACGCCATCCCTCGATTGGACAGTTGGGTCGACCACCGAGTATAAAGTACTCTCGAGAACTATCTCGTACTACAACAAGCTTCGGTGCAAGTTTTCGGTCTGAGAAAGAATCTCTTGGACGAATTGGAGTTGATGGAATGGAAATGGAGAAACCAAGGCATGTTTCAGCAAGAAGACTTTACTCCATGGTCGGACCGGATTGGATGTATGGAGTCGTCGGTGTCATTGGAGCATTTGTTACTGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTCTATATGGACTGGGATACAACTCAACATGAGATCAAGAAAATTTCTTTGCTTTTCTGTGGAGGTGCAGTTTTAACTGTCATTTTTCATGCAGTTGAGCATCTCTGTTTCGGAATTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAATGATGTTCCATGCTATTTTGAGAAATGAGATAGGATGGTTTGATGATATAAACAACACAAGTGCTATGCTTTCGTCACGTCTAGAAACCGATGCAACTTTGTTACGAACTATCGTTGTCGACCGCTCTACAATTCTTCTGCAGAATGTAGCTTTGGTCGTTGCATCATTCATCATTGCTTTCATATTGAATTGGAGAATCACTCTAGTCGTACTAGCCACATATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTACGGTGGAAACTTGAGCAAAGCATACCTGAAAGCCAACACCCTGGCTGGTGAGGCAGTTGGCAACATTAGAACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCCTTGATCTATACGCTAAGGAGCTCGTTGAGCCGTCGAAACGTTCGCTTAAACGTGGACAGATTGCTGGAATATTCTATGGTGTCTCCCAGTTCTTCATCTTTTCATCTTATGGCCTGGCATTGTGGTACGGTTCGGTTTTGATGGGACAGGGGCTTGCTAGTTTCAAATCTGTTATGAAATCATTCATGGTTTTGATAGTAACTGCATTAGCAATGGGTGAGACATTGGCATTGGCCCCTGACCTTTTGAAAGGAAACCAGATGGTGGCATCAGTGTTTGAGGTGATGGATCGACAGACCGAGGTGTCGGGCGATGTCGGTGAAGAGCTGAATGTGGTGGAGGGTACCATTGAGCTGAGGAGTGTTGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTCAAAGTGAGAGCAGGCAAGAGTATAGCCTTGGTTGGGCAAAGCGGTTCGGGGAAAAGCTCGGTTCTAGCTCTTATACTGCGATTTTACGATCCAATTGCTGGGAAGGTGATGATTGATGGTAAGAGTTTTGTTGTGATCAACTCAACAAAAGGTTTGATCATATCATATGTTGCAGGAAAAGATATAAAGAAACTGAAGCTGAAATCTGTGAGAAAGCACATTGGCCTAGTCCAACAGGAACCGGCTCTTTTCGCGACGTCGATTTACGAGAACATTGTTTACGGGAAAGAAGGAGGTTCAGAAGGCGAAGTATTGGAAGCAGCGAAGCTTGCCAATGCACATAACTTCATCAGTGCTCTTCCTGAAGGTTACTCGACGAAAGTAGGCGAAAGAGGGATCCAACTTTCGGGTGGGCAACGACAAAGGATAGCCATCGCCAGAGCAGTCCTGAAGAACCCTGAAATACTACTACTCGACGAAGCCACGAGCGCTCTCGATGTCGAATCGGAACGTGTCGTTCAACAAGCCTTAGACAGACTGATGAAGAACAGAACAACTGTGGTGGTTGCACACAGGCTTTCCACCATTAAAAAC | 3723 | 43.33 | MRNHGSVSYEEEEDDDHSMKKRKNNEEEDQEDEKKKKKKQQQNKVAFYKLFAFADFYDYFLMTFGSIGACIHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKVRKSYVKAGEIAEEILGNVRTVQAFAGEERAVNLYKGALKKTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKNIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNRLDGHIQFKDVNFSYPSRSDVVIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGEILLDGNNIKDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISKPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPRHVSARRLYSMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWDTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREMMFHAILRNEIGWFDDINNTSAMLSSRLETDATLLRTIVVDRSTILLQNVALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSKRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELRSVEFSYPSRPDVLIFKDFNLKVRAGKSIALVGQSGSGKSSVLALILRFYDPIAGKVMIDGKSFVVINSTKGLIISYVAGKDIKKLKLKSVRKHIGLVQQEPALFATSIYENIVYGKEGGSEGEVLEAAKLANAHNFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTVVVAHRLSTIKN | 1241 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 40983537 | 40991436 | - | Maker00037870 | Lcy12g1963 | 650026 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy12g1963 | 1241 | FunFam | ABC transporter B family member 25 | 1018 | 1241 | - | - | |
| Lcy12g1963 | 1241 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 690 | 1005 | - | - | |
| Lcy12g1963 | 1241 | FunFam | ABC transporter B family member 1 | 376 | 625 | - | - | |
| Lcy12g1963 | 1241 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Lcy12g1963 | 1241 | ProSitePatterns | ABC transporters family signature. | 525 | 539 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy12g1963 | 1241 | Gene3D | - | 1011 | 1241 | IPR027417 | - | |
| Lcy12g1963 | 1241 | CDD | ABC_MTABC3_MDL1_MDL2 | 386 | 624 | - | - | |
| Lcy12g1963 | 1241 | Gene3D | ABC transporter type 1, transmembrane domain | 111 | 987 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy12g1963 | 1241 | Coils | Coil | 9 | 44 | - | - | |
| Lcy12g1963 | 1241 | SUPERFAMILY | ABC transporter transmembrane region | 50 | 356 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy12g1963 | 1241 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 64 | 351 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy12g1963 | 1241 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 386 | 622 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy12g1963 | 1241 | Gene3D | ABC transporter type 1, transmembrane domain | 6 | 98 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy12g1963 | 1241 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 62 | 359 | - | - | |
| Lcy12g1963 | 1241 | ProSitePatterns | ABC transporters family signature. | 1178 | 1192 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy12g1963 | 1241 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1020 | 1239 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy12g1963 | 1241 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 378 | 624 | IPR027417 | - | |
| Lcy12g1963 | 1241 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 701 | 987 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy12g1963 | 1241 | SMART | AAA_5 | 413 | 605 | IPR003593 | GO:0016887(InterPro) | |
| Lcy12g1963 | 1241 | SMART | AAA_5 | 1047 | 1238 | IPR003593 | GO:0016887(InterPro) | |
| Lcy12g1963 | 1241 | SUPERFAMILY | ABC transporter transmembrane region | 679 | 1001 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy12g1963 | 1241 | PANTHER | ABC TRANSPORTER B FAMILY | 10 | 647 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Lcy12g1963 | 1241 | Pfam | ABC transporter transmembrane region | 67 | 334 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy12g1963 | 1241 | Pfam | ABC transporter transmembrane region | 702 | 972 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy12g1963 | 1241 | Gene3D | - | 384 | 637 | IPR027417 | - | |
| Lcy12g1963 | 1241 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1014 | 1240 | IPR027417 | - | |
| Lcy12g1963 | 1241 | Pfam | ABC transporter | 1039 | 1206 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy12g1963 | 1241 | Pfam | ABC transporter | 405 | 553 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g1963 | Lcy-Chr12:40983537 | Lcy9g2278 | Lcy-Chr9:47211832 | 0 | dispersed | |
| Lcy12g1963 | Lcy-Chr12:40983537 | Lcy1g0226 | Lcy-Chr1:2016431 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy12g1963 | K05658 | - | csv:101219304 | 2192.16 |