Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1964 ATGAGAAAGTCCAGAAGAGGAGGCCGGCGGGATGATCAGAATCGAACCAAAGAGGTTTGGGTCGCCAAACACGCGAATCAAACGCAGAATCACTCTTCTACCTCCGATTCTCAACGCTCGGACCCCGGGTATCGTCCTTCTACCAGTCGTAATTCCAACTACGAGCATCGGAATCGCCGCCGCTCCCGTCCCCAATCTGTCGAGAAAGCGGAGGTGAGTGCTTTGGCCGATGGAATAGAATCTTTTACTTGCGATGAAGAGCCTGAAGGAGTGGAGGGAAGACGCGGAGTTGTGAATTCGAACAGTGAGATTAAAGACGAGACAGCTGGAAATTCTGGCTCCAGTGAGTCTGTGGATGATGTTTTCAGTAGGTTAGAGATGCTGCAGCGTAGTTCCGAGGAGCCGGAGCTATCGGAGGAGCAGCTCAGGATTAATGATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCAATATCCTTGATGAACAAAGAGGGCAGCGCCGTTTCCAGATTTCCGTACACGTTGAGAGTCCTGGTGAGATTGCTGTTACTGCAAAGCTTAACTCATCTGGTGCTCTTGAGATCAAAAGTACTCATTCTGATGAATTCTCTTGTACTTTCAAAGTCAAGTATCTTAACCCCATTGTTTTGACCTGTTTATTACCCAAATCATATCCTAGTCACCTACCTCCATATTATACAATCTCCATCCGGTGGTTGGACTCTGCTAGAATTTCCAGTCTTTGCTCTATGTTGGATGCGATATGGACTGAGCAAGTGGGGCAGGAAGTTGTATATCCATGGGTAGAATGGCTTCAAATGTCATCTCTGGCCTATCTTCAGCTAGAGAAAGAGATAACGCTTGGTCCTTATGACAAGGGACATTCAGGAGATGCACGTGCAGTTTCAGGAGGTGTTTCTCCAGAAGTTGATGTTCCTGCAATAAAAAATTATGACAATCAGAGACGTGATGAGGATTTCTGCATGAACTTGCAGGAATGCTGCATCTGTTTAAGTCAGTATGCAGGTACAACGTTTGTAAGATTGCCATGTAAGCATTACTTTTGTTGGAAATGCATGGAAACATACTCTAACATGCATGTCAAGGAAGGCACCGTTACCAAACTCAAATGTCCAGACGCCAAATGCGACCTTATGGTTCCTCCTGGTCTTTTGAAGCAATTGCTTGGTGATGAAGAGTTTGAAAGATGGGAATCCATGATACTCACAAAAACACTGGAATCAATGCCAGATGTGGTTTATTGCCCACGGTGTGAAACCCCCTGCCTAGAGGATGTAGATCATGATGCTCAATGCTCAAAGTGTTACTATAGTTTTTGTACACTCTGTAGTGAGCGACGTCATGTTGGAATTGAATGCATGACTCCAGAAATGAAGCTTCGTCTTCTTGAGGAGCGTCAAAATTCATCTCAGTTAAGTAGTGATCAAAGACGAAAGGAACGTGAGATGATAAATGAGCTTATGAGTGTCAAGGAAATACTTCGTGATGCCAAGCAATGCCCATCTTGTAAAATGGCAATATCGCGGACCGAGGGTTGCAATAAGATGGTTTGCAATAACTGTGGACAGTATTTCTGTTACCGCTGTAGCAAGGCAATTGATGGATATGATCATTTCAGGGAGGGCACATGTGAGTTGTTCCCGCAAGAAACCATTCAACAGTGGGAAGAGCGCATGAATATACGGCAGGTGATGGGCCAGATTCAAGCAGAACTTTTTCCTGAACATGGTCATCCATGTCCTACTTGTCGTCAAGTTAATGCCAAGGTGAGTAGGAGTAGGACACTTTTACATTCTGATGTTGGGAATAACAATCACATACGTTGCTGGGCATGTCAAACCCACTATTGCTATCTATGCAGAAAAGTTGTGAAGCGCAGCTCTCAGCATTATGGACCCAAGGGGTGCAAACAACACACAATGGATTGA 1971 44.9 MRKSRRGGRRDDQNRTKEVWVAKHANQTQNHSSTSDSQRSDPGYRPSTSRNSNYEHRNRRRSRPQSVEKAEVSALADGIESFTCDEEPEGVEGRRGVVNSNSEIKDETAGNSGSSESVDDVFSRLEMLQRSSEEPELSEEQLRINDQLQEDELLALESIYGENVNILDEQRGQRRFQISVHVESPGEIAVTAKLNSSGALEIKSTHSDEFSCTFKVKYLNPIVLTCLLPKSYPSHLPPYYTISIRWLDSARISSLCSMLDAIWTEQVGQEVVYPWVEWLQMSSLAYLQLEKEITLGPYDKGHSGDARAVSGGVSPEVDVPAIKNYDNQRRDEDFCMNLQECCICLSQYAGTTFVRLPCKHYFCWKCMETYSNMHVKEGTVTKLKCPDAKCDLMVPPGLLKQLLGDEEFERWESMILTKTLESMPDVVYCPRCETPCLEDVDHDAQCSKCYYSFCTLCSERRHVGIECMTPEMKLRLLEERQNSSQLSSDQRRKEREMINELMSVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIDGYDHFREGTCELFPQETIQQWEERMNIRQVMGQIQAELFPEHGHPCPTCRQVNAKVSRSRTLLHSDVGNNNHIRCWACQTHYCYLCRKVVKRSSQHYGPKGCKQHTMD 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41002940 41007683 + Maker00038123 Lcy12g1964 650027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1964 656 ProSiteProfiles Zinc finger RING-type profile. 341 389 IPR001841 -
Lcy12g1964 656 SUPERFAMILY UBC-like 145 280 IPR016135 -
Lcy12g1964 656 ProSiteProfiles RWD domain profile. 151 286 IPR006575 GO:0005515(InterPro)
Lcy12g1964 656 Gene3D - 482 585 - -
Lcy12g1964 656 Pfam IBR domain 511 545 - -
Lcy12g1964 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 423 IPR013083 -
Lcy12g1964 656 ProSitePatterns Zinc finger RING-type signature. 358 367 IPR017907 -
Lcy12g1964 656 FunFam RBR-type E3 ubiquitin transferase 336 420 - -
Lcy12g1964 656 SMART RWD2001b 151 286 IPR006575 GO:0005515(InterPro)
Lcy12g1964 656 FunFam RBR-type E3 ubiquitin transferase 482 588 - -
Lcy12g1964 656 SUPERFAMILY RING/U-box 409 471 - -
Lcy12g1964 656 MobiDBLite consensus disorder prediction 1 118 - -
Lcy12g1964 656 MobiDBLite consensus disorder prediction 102 118 - -
Lcy12g1964 656 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 187 555 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lcy12g1964 656 Pfam IBR domain, a half RING-finger domain 409 467 IPR002867 GO:0008270(InterPro)
Lcy12g1964 656 ProSiteProfiles TRIAD supradomain profile. 337 563 IPR044066 -
Lcy12g1964 656 SUPERFAMILY RING/U-box 588 653 - -
Lcy12g1964 656 SMART ring_2 341 388 IPR001841 -
Lcy12g1964 656 SMART ring_2 514 597 IPR001841 -
Lcy12g1964 656 SMART ibrneu5 496 558 IPR002867 GO:0008270(InterPro)
Lcy12g1964 656 SMART ibrneu5 409 467 IPR002867 GO:0008270(InterPro)
Lcy12g1964 656 MobiDBLite consensus disorder prediction 52 67 - -
Lcy12g1964 656 SUPERFAMILY RING/U-box 500 553 - -
Lcy12g1964 656 SUPERFAMILY RING/U-box 338 422 - -
Lcy12g1964 656 Pfam RWD domain 147 280 IPR006575 GO:0005515(InterPro)
Lcy12g1964 656 Gene3D Ubiquitin Conjugating Enzyme 138 291 IPR016135 -
Lcy12g1964 656 MobiDBLite consensus disorder prediction 20 51 - -
Lcy12g1964 656 CDD BRcat_RBR_RNF14 420 471 - -
Lcy12g1964 656 CDD RING-HC_ITT1-like 338 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1964 K11971 - - csv:101211646 1097.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30