Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1968 ATGTATGGGGATTGCCAAGTGATGTCAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAACTTCATGTCCAATTTCCAACATTTTCCTTCCATTATACCTAAGGAAGAAAATGGGTTGATGAGAGGGAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCCAGGAATTGAAATGGAGAGTAATGATAATAATAATATTATTCAGCAAAATCAGAAGAAAAAACGTTATCATAGGCATACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTCAAACCTCGCCAAGTCAAGTTTTGGTTCCAAAATCGCCGAACCCAAATGAAGGCACAACAAGACAGAGCTGATAATGTGATACTTAGGGCTGAGAATGAGACCTTAAAGAATGAGAATTATAGACTCCAAACTGCCCTAAGAAATATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAGCCAAGCTTGGATGAACAACAGCTTCGCCTTGAGAATGCTAGACTTAGAGAACAGTTAGAACAAGTTTGTTCATTGACTTCAAGATACACTGGTCGCCCAATCCAAGGGATGCCCTCCACAGCCCCTCTCATGCCACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATGGTTACGTCGTCCGAAATGATGCCGCTGCCATCGATGCTCCCGCCCGAGGCCGCCCACTTCCCTGAGGGCGGTCTGTTAATTGAAGAGGAAAAGACACTTGCAATGGACCTCGCTGTGTCGTCCATGGCTGAACTTTTGAAGATGTGCCGCTCGACCGAGCCTCTTTGGATTCGAGACAGCGAGAACGGTAAGGAAGTTCTAAATGTAGAAGAGCATGCCAGGATGTTCCCATGGCCGTTGAACCTCAAGCAACACTTGATGAATGAGTTTAGTACCGAAGCCACCCGCGACAGCGCCGTGGTTATAATGAATAGCATCACTCTCGTCGATGGCTTTCTCGACGCGAACAAATGGATGGAATTATTTCCTTCAATCGTGGCCAAAGCAAAAACTGTGCAAGTAATTTCATCAAGTGTTTCAAGCCATGGCAGTGGTTCCCTTCAGCTGATGTATGCAGAGCTTCAGGCTCTTTCTCCTCTTATTCCGACGAGAGAAGCCCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGGCAATCGTTGATTTTCCGATCGATAGCTTTCATGACAGTCTTCAGCACTCGTTTCCCAGATACAGGAGAAGGCCATCTGGCTGCATAATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATCACTTTGTTCATAGTGGAATGGCTTTTGGAGCTCAACGCTGGTTGGCCATCTTACAAAGACAATGCGAGAGAATTGCAAGCCTCATGGCTAGAAATATTTCCGACCTTGGAGTGATACCTTCACCAGAAGCAAGACAGAACCTAATGAAGCTGGCTCAGAGAATGATCAGAACTTTCTCCATCAACATCAGCACCTCGGGCGGCCAGTCGTGGACCGCGCTATCCGATTCTCCGGACGATACCGTCCGTATAACCACCCGGAAGAACGTCGAGCCTGGCCAACCTAACGGGGTTATTCTCAGCGCTGTCTCCACCACCTGGCTTCCCTATCCTCATTACCGAGTCTTTGATCTTCTCCGAGACGAACGACGACGTTCTCATCTGGAGGTTCTTTCCAATGGGAATTCATTGCACGAGGTGGCTCACATTGCCAATGGCTCCCACCCTGGAAATTGCATGTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTACAGGAGAGCTGCACAGACCAGTCCGGCAGCCTCGTCGTCTACGCGACGATCGATGTCGATTCGATTCAATTAGCCATGAGCGGAGAAGATCCCTCCTGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCCGTCGGGTCGACCACCAATGATCACCCAGCACCGCCACCCGAAGACGGAACCGCTGCTGCTGCAGTCGTCAACTCCGGCTGCCTCCTTACGGTTGGCCTGCAAGTTCTAGCCAGCACCATTCCATCAGCAAAGCTCAACCTATCTAGCGTGACCGCCATCAACAATCACCTCTGTAACACGGTGCACCAAATCAACGAGGCTCTCGGCAGCCCGACTGGTCCCGACAATGGCAATAGCGTTGTCGAGGCGAAAACCGCACCGCCACCGCCGCCGAAGCAATAA 2415 48.86 MYGDCQVMSSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSIIPKEENGLMRGKEDMESGSGSEQLVEENPGIEMESNDNNNIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENETLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLREQLEQVCSLTSRYTGRPIQGMPSTAPLMPPSLDLDMNIYSRQYTEAMVTSSEMMPLPSMLPPEAAHFPEGGLLIEEEKTLAMDLAVSSMAELLKMCRSTEPLWIRDSENGKEVLNVEEHARMFPWPLNLKQHLMNEFSTEATRDSAVVIMNSITLVDGFLDANKWMELFPSIVAKAKTVQVISSSVSSHGSGSLQLMYAELQALSPLIPTREAHFLRCCQQNADEGSWAIVDFPIDSFHDSLQHSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNHFVHSGMAFGAQRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSINISTSGGQSWTALSDSPDDTVRITTRKNVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSHLEVLSNGNSLHEVAHIANGSHPGNCMSLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPVGSTTNDHPAPPPEDGTAAAAVVNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINEALGSPTGPDNGNSVVEAKTAPPPPPKQ 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41033142 41039539 + Maker00038070 Lcy12g1968 650031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1968 804 ProSiteProfiles START domain profile. 282 521 IPR002913 GO:0008289(InterPro)
Lcy12g1968 804 Gene3D - 311 517 IPR023393 -
Lcy12g1968 804 SMART START_1 291 518 IPR002913 GO:0008289(InterPro)
Lcy12g1968 804 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy12g1968 804 SUPERFAMILY Bet v1-like 556 776 - -
Lcy12g1968 804 SUPERFAMILY Homeodomain-like 79 150 IPR009057 -
Lcy12g1968 804 CDD homeodomain 94 150 IPR001356 GO:0003677(InterPro)
Lcy12g1968 804 Coils Coil 197 217 - -
Lcy12g1968 804 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
Lcy12g1968 804 SUPERFAMILY Bet v1-like 284 520 - -
Lcy12g1968 804 MobiDBLite consensus disorder prediction 779 804 - -
Lcy12g1968 804 FunFam Homeobox-leucine zipper protein HDG1 77 165 - -
Lcy12g1968 804 Gene3D - 77 160 - -
Lcy12g1968 804 Pfam Homeodomain 92 147 IPR001356 GO:0003677(InterPro)
Lcy12g1968 804 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 779 IPR042160 -
Lcy12g1968 804 SMART HOX_1 90 153 IPR001356 GO:0003677(InterPro)
Lcy12g1968 804 CDD START_ArGLABRA2_like 286 517 - -
Lcy12g1968 804 Pfam START domain 293 518 IPR002913 GO:0008289(InterPro)
Lcy12g1968 804 Coils Coil 148 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1968 Lcy-Chr12:41033142 Lcy13g0637 Lcy-Chr13:8674854 1.93E-204 dispersed
Lcy12g1968 Lcy-Chr12:41033142 Lcy4g0564 Lcy-Chr4:6910018 3.10E-207 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19303 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1968 - - - 0.0