Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1970 ATGGAGCTATTTCCAGCACAGCCAGATTTGTCACTGCAAATTAGTCCTCCAAATACCAATAAACCCTCTTCCACTTGGAGAAGATCAACAAGCTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTCAATTTGGATTCCTCTAAACCCACTCCCAAACACCACCCTAATCATCATCTTCTTCATCATCATCATCACTCTTTTATTGACCTCTCACTCTCTAACTTAACCCAAATTAACCATCACCAATACTCCACTATTGGTGTTGCTCCTCCTCATCACCACCATCACCACCACCATCCCGCCTTCAACGGCGGCGGCGGTCACCTTTTTGAAACCCTACACAAATCCCACCACCGACCCGCCGTCTTCCCCCACAATAATCCCCCGCCGTTGGAGCCACTGCCGCCGACGCCGTTCCCGGGGCAGAACAATGGCCAAGACTTGGGATTCTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCCCCGGCGGCGGCGGCGCCGTCGCTCCCTCCGCCGCCGGCCACGGCCAGATTATGATGCGATCGAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGAGATGGACTTCCACTCTCCACGCTCGCTTTGTTCATGCTGTCGAGCTCCTCGGCGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTGAAAGATCTAACCTTGGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATACGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAGCTATGGGAAGACAAAATGAGCACTCAGTTCAACAAACAAGGCAAAACCCTCATCAAGATAAGGATTACCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGCTGCATGGTTTGCCTAATGATTCTTCTAGGGACCTTTCTTCGTCACTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAAAGACTATCAGAAATAAGTTCATCAACAGATGTTTGTGGAGGGACAAATCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGCCAGTTTGA 1173 48.59 MELFPAQPDLSLQISPPNTNKPSSTWRRSTSSQEEVDLGFWNNLNLDSSKPTPKHHPNHHLLHHHHHSFIDLSLSNLTQINHHQYSTIGVAPPHHHHHHHHPAFNGGGGHLFETLHKSHHRPAVFPHNNPPPLEPLPPTPFPGQNNGQDLGFLRPIRGIPVYHQTTNPAGPGGGGAVAPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNEHSVQQTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDVCGGTNPQKPNLEFTLGRPV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41078032 41082881 + Maker00038061 Lcy12g1970 650033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1970 390 MobiDBLite consensus disorder prediction 1 31 - -
Lcy12g1970 390 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Lcy12g1970 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677(InterPro)
Lcy12g1970 390 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
Lcy12g1970 390 Gene3D - 205 262 - -
Lcy12g1970 390 MobiDBLite consensus disorder prediction 11 31 - -
Lcy12g1970 390 MobiDBLite consensus disorder prediction 340 390 - -
Lcy12g1970 390 FunFam Myb family transcription factor 204 262 - -
Lcy12g1970 390 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 389 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Lcy12g1970 390 MobiDBLite consensus disorder prediction 359 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1970 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1970 Lcy-Chr12:41078032 Lcy5g2360 Lcy-Chr5:46438299 6.36E-34 dispersed
Lcy10g1119 Lcy-Chr10:33547208 Lcy12g1970 Lcy-Chr12:41078032 1.05E-33 transposed
Lcy12g0279 Lcy-Chr12:3453243 Lcy12g1970 Lcy-Chr12:41078032 3.11E-40 transposed
Lcy12g1970 Lcy-Chr12:41078032 Lcy6g2249 Lcy-Chr6:47099200 1.08E-90 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy12g0279 . 1 190 G2-like Transcription Factor Family AT5G16560 56.1 6.7e-42 169.1
Lcy12g1970 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 5.7e-41 166.0
Lcy12g1970 . 196 389 G2-like Transcription Factor Family AT4G17695 50.3 1.5e-36 151.0
Lcy13g2020 . 8 151 G2-like Transcription Factor Family AT5G42630 64.2 2.2e-42 169.9
Lcy9g2153 . 10 182 G2-like Transcription Factor Family AT5G42630 58.2 1.1e-41 167.5
Lcy10g0975 . 20 261 G2-like Transcription Factor Family AT1G25550 56.3 1.8e-54 210.3
Lcy7g0438 . 193 434 G2-like Transcription Factor Family AT1G25550 50.2 5.8e-53 205.3
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT5G05090 57.0 2.0e-74 276.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT5G05090 57.5 5.3e-72 268.5
Lcy11g1775 . 12 317 G2-like Transcription Factor Family AT3G24120 51.5 1.0e-63 241.1
Lcy8g1657 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 7.9e-40 161.8
Lcy8g1657 . 1 333 G2-like Transcription Factor Family AT1G79430 55.8 2.3e-78 290.0
Lcy1g1774 . 1 303 G2-like Transcription Factor Family AT3G10760 62.6 1.7e-91 333.6
Lcy5g0800 . 1 287 G2-like Transcription Factor Family AT3G10760 58.8 2.5e-87 319.7
Lcy1g1774 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.5e-60 230.3
Lcy12g2089 . 243 460 G2-like Transcription Factor Family AT2G20400 50.2 1.1e-44 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19305 None None None None Lcy TF