Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1970 ATGGAGCTATTTCCAGCACAGCCAGATTTGTCACTGCAAATTAGTCCTCCAAATACCAATAAACCCTCTTCCACTTGGAGAAGATCAACAAGCTCACAAGAAGAAGTTGATTTGGGGTTTTGGAATAATCTCAATTTGGATTCCTCTAAACCCACTCCCAAACACCACCCTAATCATCATCTTCTTCATCATCATCATCACTCTTTTATTGACCTCTCACTCTCTAACTTAACCCAAATTAACCATCACCAATACTCCACTATTGGTGTTGCTCCTCCTCATCACCACCATCACCACCACCATCCCGCCTTCAACGGCGGCGGCGGTCACCTTTTTGAAACCCTACACAAATCCCACCACCGACCCGCCGTCTTCCCCCACAATAATCCCCCGCCGTTGGAGCCACTGCCGCCGACGCCGTTCCCGGGGCAGAACAATGGCCAAGACTTGGGATTCTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCCCCGGCGGCGGCGGCGCCGTCGCTCCCTCCGCCGCCGGCCACGGCCAGATTATGATGCGATCGAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGAGATGGACTTCCACTCTCCACGCTCGCTTTGTTCATGCTGTCGAGCTCCTCGGCGGCCATGAAAGAGCGACGCCGAAGTCGGTTCTCGAGCTCATGGATGTGAAAGATCTAACCTTGGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGCCAATCAGATTTATACGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAGCTATGGGAAGACAAAATGAGCACTCAGTTCAACAAACAAGGCAAAACCCTCATCAAGATAAGGATTACCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGCTGCATGGTTTGCCTAATGATTCTTCTAGGGACCTTTCTTCGTCACTCGAGAATGATATGGATCCAAAGTGCTCAAACAATGAAAGACTATCAGAAATAAGTTCATCAACAGATGTTTGTGGAGGGACAAATCCTCAGAAGCCTAATTTGGAATTCACATTAGGAAGGCCAGTTTGA 1173 48.59 MELFPAQPDLSLQISPPNTNKPSSTWRRSTSSQEEVDLGFWNNLNLDSSKPTPKHHPNHHLLHHHHHSFIDLSLSNLTQINHHQYSTIGVAPPHHHHHHHHPAFNGGGGHLFETLHKSHHRPAVFPHNNPPPLEPLPPTPFPGQNNGQDLGFLRPIRGIPVYHQTTNPAGPGGGGAVAPSAAGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNEHSVQQTRQNPHQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDMDPKCSNNERLSEISSSTDVCGGTNPQKPNLEFTLGRPV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41078032 41082881 + Maker00038061 Lcy12g1970 650033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1970 390 MobiDBLite consensus disorder prediction 1 31 - -
Lcy12g1970 390 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Lcy12g1970 390 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677(InterPro)
Lcy12g1970 390 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
Lcy12g1970 390 Gene3D - 205 262 - -
Lcy12g1970 390 MobiDBLite consensus disorder prediction 11 31 - -
Lcy12g1970 390 MobiDBLite consensus disorder prediction 340 390 - -
Lcy12g1970 390 FunFam Myb family transcription factor 204 262 - -
Lcy12g1970 390 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 6 389 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Lcy12g1970 390 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1970 Lcy-Chr12:41078032 Lcy5g2360 Lcy-Chr5:46438299 6.36E-34 dispersed
Lcy10g1119 Lcy-Chr10:33547208 Lcy12g1970 Lcy-Chr12:41078032 1.05E-33 transposed
Lcy12g0279 Lcy-Chr12:3453243 Lcy12g1970 Lcy-Chr12:41078032 3.11E-40 transposed
Lcy12g1970 Lcy-Chr12:41078032 Lcy6g2249 Lcy-Chr6:47099200 1.08E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19305 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1970 - - - 0.0