Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1977 ATGGGTGGCAGCGAGATGAATAAATCAGCAAAGGAGGAACCCAAGACAACGCCTGCCACTACACAGGAACAGTCTCCAAACACAGGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCACCAATACCTCCACCAGGATATTTGGCAACAAGCCCCCAAGCACACCCATATATGTGGGGGGTTCAGCCCATTATGCCCCCTTATGGAACCCCTCCACATCCCTATGTCGCAATGTATCCCCATGGTGGCATATATGCTCATCCGCCCATTCCTCCGGGATCATATCCTTATAGTCCTTTTGCTATAGCTTCTCCAAATGGCATTGCTGAGGCTTCTGGGAATACACCAGGAAACATGGAAGGGGATGGTAAGCCATCTGAGCTGAAAGAAAAATTGCCAATTAAAAGATCAAAAGGAAGTCTGGGAAGTTTAAACATGATAACTGGGAAGAACAATGAACTTGGTAAAACATCAGGAACATCTGCTAACGGAGTTTATTCTAAAAGTGCTGAAAGTGAAAGTGAAGGTTCAAGTGAAAGAAGTGATGCCGACTCTCAAAATGTAAGCGTTGTGCCACTCTATTACCATGTGAATGTTTATTCTATAGATTCCTCCATATTTCTTGAGGGTAGTTCAGGGATGGATAAACATCCATTTGATTCACAACTAAAATCTGGTTCTGGGAAAGATTCTTTAGAAGGTTTGGGAATTTTTTCTATTTTGCACTCAGTGTACACATTGTTTTATATTGACGAGGAAGTTTTCGTCTCTGGTACAGGTGGAGGGACTCCTAATGGTTTGATGCATGGTTCTCAAAATGAAGGACACAGTCTCGCTCATTCATTGGTAAACCAAACAATGTCCATAATACCAATTCAAGCTTCTGGAGCTGTTACAGGTCCTGCTACAAATCTGAATATAGGGATGGATTATTGGGGTACTCCAACAACTTCTGCCATCCCTTTGTTGTGTGGGAAGGTTCCTTCGGCTCCGGTTGCAGGAGCTGCTGCTGCTGGGTCACGAGACAGCATTCAGTCACAGATTTGGTTACAGGATGAAAGAGAGATGAAAAGGCAAAGAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGATCTCGGTTGCGTAAACAGGCTGAATGTGATGAGCTGTCTCAGCGCGCCGAAGCTTTAAAGGAAGAAAATGCAAGCCTTAGATCCGAAGTGGATAGGATTAGGAGCGAGTACGAGCAGCTTCTTTCAGAAAATGCCTCTCTCAAGAGGAGACTTGGAGAAAGTGATGGAAATGAAGATCCAAGATCTGCCAAAGACAGCCAAAATTTGAATAAACAAGCTCAGCATACATCCCGGACCGAGCTCGCTAAGGGGATCGTCGATCTTCGATCGTCCTTCCATTCTTATGGAGGCTTCGTCTTTAACCTCGAAGCCCTGTGTAGTATCCTTGTACTCATATTTGATGAGTGTTATGCAACATTTCACTTGAGTTTTTTCAGTGTAAAATAA 1512 43.85 MGGSEMNKSAKEEPKTTPATTQEQSPNTGTGIVNPEWSGFQAYSPIPPPGYLATSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAIASPNGIAEASGNTPGNMEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGVYSKSAESESEGSSERSDADSQNVSVVPLYYHVNVYSIDSSIFLEGSSGMDKHPFDSQLKSGSGKDSLEGLGIFSILHSVYTLFYIDEEVFVSGTGGGTPNGLMHGSQNEGHSLAHSLVNQTMSIIPIQASGAVTGPATNLNIGMDYWGTPTTSAIPLLCGKVPSAPVAGAAAAGSRDSIQSQIWLQDEREMKRQRRKQSNRESARRSRLRKQAECDELSQRAEALKEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGNEDPRSAKDSQNLNKQAQHTSRTELAKGIVDLRSSFHSYGGFVFNLEALCSILVLIFDECYATFHLSFFSVK 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41161771 41169705 - Maker00037974 Lcy12g1977 650040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1977 503 Pfam Disordered region downstream of MFMR 269 325 - -
Lcy12g1977 503 Pfam Disordered region downstream of MFMR 134 193 - -
Lcy12g1977 503 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 359 422 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1977 503 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 364 379 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1977 503 Coils Coil 370 425 - -
Lcy12g1977 503 MobiDBLite consensus disorder prediction 118 189 - -
Lcy12g1977 503 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Lcy12g1977 503 MobiDBLite consensus disorder prediction 423 451 - -
Lcy12g1977 503 MobiDBLite consensus disorder prediction 145 176 - -
Lcy12g1977 503 Pfam bZIP transcription factor 357 419 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1977 503 SMART brlzneu 357 421 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1977 503 Gene3D - 360 415 - -
Lcy12g1977 503 MobiDBLite consensus disorder prediction 356 385 - -
Lcy12g1977 503 SUPERFAMILY Leucine zipper domain 360 416 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1977 503 MobiDBLite consensus disorder prediction 1 45 - -
Lcy12g1977 503 CDD bZIP_plant_GBF1 362 412 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy12g1977 503 MobiDBLite consensus disorder prediction 13 37 - -
Lcy12g1977 503 MobiDBLite consensus disorder prediction 423 440 - -
Lcy12g1977 503 PANTHER G-BOX-BINDING FACTOR 3-RELATED 17 452 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1977 Lcy-Chr12:41161771 Lcy1g0729 Lcy-Chr1:6231076 1.39E-23 dispersed
Lcy12g1977 Lcy-Chr12:41161771 Lcy6g2255 Lcy-Chr6:47216578 2.80E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19307 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1977 K09060 - csv:101214217 690.263