Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1980 AAGCCAGAGCCCAAGGTCGCTCTTCAGTCTTCTACAGTCGGAGTTCTGAGAGCTCAACAATTTGATTCAACTATTGCTTCCGAGCCTCCGGTTGTATCATCACGACCTGTAACTGATTTGAAGTCGAAGTTGATCGAGGAAGAGCAGAAATGGCCGTGTAAGTGTGTTCGTTCTTTGCGGGTTGCTTCAGCTCCAGGGAAAGTTTTAATGACCGGAGGCTACCTTGTCTTGGAGAGACCGAATGCAGGGCTCGTACTTAGTACCAATGCTCGTTTTTATGCAATTGTAAAACCAATTTACGAGGAAATCAAGCCTGACAGCTGGGCATGGTCGTGGACAGATGTTAAGTTGACATCTCCTCAGCTCCTGAGAGAGAGCATCTACAAATTATCATTGAAAAACCAATCTCTTCAGAGTGCCTATCCAAGGCAAGTAAATTATCAATCAAGAAACCCATTTGTAGAAAAAGCTGTGGAGTACTGTGTAGCAGCTGCATGTGCAAAATTTCTTGACAAGGACAACAAGGATGCATTACACAAACTGCTCTTGCAAGGTCTTGATATCACTATTTTAGGTTGCAACGAGTTCTACTCATATCGGAGTCAGATTGAGGCTCGTGGACTCCCATTAACATCAGAATCATTGGCTTCCCTGCCTCCTTTTTCATCAATTACCTTCAATGATGAGGAATCATATGGGAAAAATTGCAAGCCTGAAGTTGCAAAAACTGGATTGGGCTCATCTGCTGCAATGACGGCTGCTGTCGTTGCTGCTTTACTTAACTACCTAGGGGTTGTAAATCTTTCCTTACTGACAGGTGACCAAGAACAGAAAGGCAGTGCGGATCTTGATTTGGTGCATATAATAGCTCAAAGTGCCCACTGCATTGCACAAGGAAAAGTTGGTAGTGGCTTTGATGTCAGTTCTGCAGTTTATGGCAGTCAACGCTATGTACGGTTTTCACCAGAAGTGCTTTCTTCTGCTCAGGCTGCCAAGAATGGAATACCCATACAAGAAGTCATTGTCAATGTCTTAAATCAGAAGTGGGACCATGAGAGGACTAAGTTCTCTCTGCCTCCATTAATGATTCTCGTAAGCATCCAGAATCTGCCTTGTGTTCTTCTGGTACTTGGAGAGCCAGGAGTGGGAGGGTCATCCACGCCTTCAATGGTAGGTGCTGTCAAAAAATGGCAAAAATCTGACCCTCAAAAGTCCTTAGACACGTGGAGGAAGTTGTCAGAAGGGAACTCAGAACTTGAAACTCAACTCAATTTGTTGAGTAAACTTGCAGTAGAACACTGGGATGCTTATCAATATATCATAAACAGTTGTTGCAGGTTGACCTCGGAGAAGTGGATCCATCAAGCCACAGAACCAAGCCAGCAAGCCATCATCAAAGCATTATTAGGAGCAAGAAATGCTATGCTTGGGATCAGGCATCATATGCGCCTGATGGGTGAAGCTGCTGGTGTTCCGATTGAGCCGGATTCACAAACCAAGCTTTTAGATGCTACCATGAATATGGAAGGAGTCCTGTTAGCCGGTGTTCCAGGCGCAGGTGGGTTTGATGCTGTTTTTGCTGTGACCTTGGGAGATTCAACCAGCAATGTGATTAAATCATGGAGTTCACTTGATATTTTGGCTCTCCTTGTTAGAGAAGATCCCCGTGGTGTTGCTTTGGAAAGTTGTGATCCGCGAACCAAGGCAATTACGTCAGCTGTTTCATCAGTTCATATTTAG 1740 44.54 KPEPKVALQSSTVGVLRAQQFDSTIASEPPVVSSRPVTDLKSKLIEEEQKWPCKCVRSLRVASAPGKVLMTGGYLVLERPNAGLVLSTNARFYAIVKPIYEEIKPDSWAWSWTDVKLTSPQLLRESIYKLSLKNQSLQSAYPRQVNYQSRNPFVEKAVEYCVAAACAKFLDKDNKDALHKLLLQGLDITILGCNEFYSYRSQIEARGLPLTSESLASLPPFSSITFNDEESYGKNCKPEVAKTGLGSSAAMTAAVVAALLNYLGVVNLSLLTGDQEQKGSADLDLVHIIAQSAHCIAQGKVGSGFDVSSAVYGSQRYVRFSPEVLSSAQAAKNGIPIQEVIVNVLNQKWDHERTKFSLPPLMILVSIQNLPCVLLVLGEPGVGGSSTPSMVGAVKKWQKSDPQKSLDTWRKLSEGNSELETQLNLLSKLAVEHWDAYQYIINSCCRLTSEKWIHQATEPSQQAIIKALLGARNAMLGIRHHMRLMGEAAGVPIEPDSQTKLLDATMNMEGVLLAGVPGAGGFDAVFAVTLGDSTSNVIKSWSSLDILALLVREDPRGVALESCDPRTKAITSAVSSVHI 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41184542 41190426 + Maker00038125 Lcy12g1980 650043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1980 579 Gene3D - 58 366 IPR014721 -
Lcy12g1980 579 Pfam GHMP kinases N terminal domain 243 313 IPR006204 GO:0005524(InterPro)
Lcy12g1980 579 PIRSF PMK_GHMP_euk 58 570 IPR016005 GO:0004631(InterPro)
Lcy12g1980 579 PANTHER - 61 568 IPR035102 GO:0004631(PANTHER)|GO:0005777(PANTHER)|GO:0010142(PANTHER)|GO:0019287(PANTHER)
Lcy12g1980 579 FunFam Probable phosphomevalonate kinase 58 367 - -
Lcy12g1980 579 NCBIfam phosphomevalonate kinase 61 567 IPR016005 GO:0004631(InterPro)
Lcy12g1980 579 SUPERFAMILY Ribosomal protein S5 domain 2-like 61 325 IPR020568 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1980 K00938 - - csv:101214936 919.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1980 Lcy-Chr12:41184542 Lcy6g2259 Lcy-Chr6:47246148 1.85E-205 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003438 2 1 2 0 2 1 2 2 2 1 1 2 2 1 1 2 2 2 2 2 1 2 2 2 2 1 2 1 2 1 48