Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1981 ATGATGGGGACATCAGTCCTTAACCACAACCATCATTTATTGCCCTCAAAAGATCTAGCACAGAGTTTGGAGTTCAATTTGAAGCATAAGGAGCAAGAATATTTGAACCTTTTGAAGAAATGCAGGAGCTTAGAAGAATTCAAACAAGTTCATGTTCAAATTCTGAAGTTGGGTCTTTTCTGGGATTCCTTCTGTTCAAGCAGTCTTTTAGCCACTTGTGCTCTCTCAGATTGGAACAGTATGGACTATGCCTGCTCCATTTTCCAGCAATTGGATGAACCTACCACATTTCATTTCAACACAATGATCAGAGGGCATGTTAATAACATGAACTTTGAGAATGCGCTATATCTGTATGATGATATGCTTCAAAGAGAAGTTGAACCCGACAACTTCACGTACCCGGCAGTTCTCAAGGCTTGTGCCCGGTTGGCAGCGATCGAGGAAGGAATGCAGATTCATGGTCACATATTCAAGCTTGGTCTGGAATATGATCTATTTGTACAGAATAGCTTGATCAACATGTATGGGAAGTGTCGGGATATCGAACTGTCTTGTGCTATTTTTCAGCGTATGCAGCAAAAGAGTGTGGCTTCTTGGAGTGCTATAATTGCAGCTCATGCTAGTCTTGGATTGTGGTGGGAATGTTTGGTGTTATTTGAGGATATGAGTAGAGAAGGATGTTGGAGGGCTGAGGAAAGCATATTAGTCAGTGTGCTCACTGCTTGCACCCATCTGGGTGCCCTTCATTTGGGAAGATGCGCCCATGCTTCTCTTTTGAGGAACATTACTGAACTAAATGTTGCAGTTATGACTTCCTTAATGGATATGTATGTGAAATGTGGGTCTCTAGAGAAAGGATTGTGTCTCTTCCAAAACATGACCAAAAAGAATCAACTATCCTATAGTGTCATAATCTCAGGGCTTGGCTTACATGGACATGGTGAAGAAGCTCTAAGAATCTTCTCAGAAATGGTTAAAGAAGGCTTAGAGCCGGATGATGTTATCTATGTTGGTGTACTTAGCGCTTGTAGTCATTCCGGCCTGGTCAACAAGGGTCGTGATCTTTTCGATAGGATGAAGTCTGAGCATGGGATTGAACCGACAATGCAGCATTATGGCTGCATGGTAGACCTAATGGGCCGAGCTGGTATGCTTGAAGAAGCATTTGAGCTTGTCCAAAGTATGCCTATAAAACCAAATGATATCACTTGGCGGAGCCTTCTAAGTGCTTGTAAGATTCATGACAACTTAAAACTTGGCCAGATTGCTGCAGAGAATCTATTTCAGTTATCCTCGCACAATCCTGGTGATTACCTAGTTTTGTCTAATATGTATGCAAGAGCTCACCAATGGGAGAATGCAGCTAAGGTGAGAACAAAACTGGTCAACCATGGCTTGATCCAGACACCAGGGTATAGCTTGGTAGAGGTGAAAAGGAAGGTATACAAATTTGTTTCACAGGATAAATCGAACTGCAAATCGGGTAAAATCTACGAGATGATTCATCAGATGGAATGGCAATTGAGATTTGAAGGTTATATGCCAGATACATCACAGGTTATGCTTGATATAGAAGAAGAAGAAAAAAGAGAGAGATTGAAAGGTCATAGCCAGAAGTTGGCCATAGCTTTTGCTCTCATTCATACATCACAAGGATCTGCAATAAGGATAATTAGAAACCTGAGAATGTGTAATGACTGTCATACATACACTAAACTGATTTCAATCATCTATGAAAGAGAAATTATTGTAAGAGACCGGAATCGGTTCCACCATTTTAAAGATGGAAATTGCTCTTGTAGGGATTACTGGTGA 1818 41.09 MMGTSVLNHNHHLLPSKDLAQSLEFNLKHKEQEYLNLLKKCRSLEEFKQVHVQILKLGLFWDSFCSSSLLATCALSDWNSMDYACSIFQQLDEPTTFHFNTMIRGHVNNMNFENALYLYDDMLQREVEPDNFTYPAVLKACARLAAIEEGMQIHGHIFKLGLEYDLFVQNSLINMYGKCRDIELSCAIFQRMQQKSVASWSAIIAAHASLGLWWECLVLFEDMSREGCWRAEESILVSVLTACTHLGALHLGRCAHASLLRNITELNVAVMTSLMDMYVKCGSLEKGLCLFQNMTKKNQLSYSVIISGLGLHGHGEEALRIFSEMVKEGLEPDDVIYVGVLSACSHSGLVNKGRDLFDRMKSEHGIEPTMQHYGCMVDLMGRAGMLEEAFELVQSMPIKPNDITWRSLLSACKIHDNLKLGQIAAENLFQLSSHNPGDYLVLSNMYARAHQWENAAKVRTKLVNHGLIQTPGYSLVEVKRKVYKFVSQDKSNCKSGKIYEMIHQMEWQLRFEGYMPDTSQVMLDIEEEEKRERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHTYTKLISIIYEREIIVRDRNRFHHFKDGNCSCRDYW 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41195629 41197446 - Maker00038135 Lcy12g1981 650044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1981 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270(InterPro)
Lcy12g1981 605 Gene3D Tetratricopeptide repeat domain 141 251 IPR011990 GO:0005515(InterPro)
Lcy12g1981 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Lcy12g1981 605 FunFam Pentatricopeptide repeat-containing protein 111 266 - -
Lcy12g1981 605 PANTHER OS07G0578800 PROTEIN-RELATED 232 495 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Lcy12g1981 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Lcy12g1981 605 Pfam PPR repeat family 298 345 IPR002885 -
Lcy12g1981 605 Pfam PPR repeat family 94 143 IPR002885 -
Lcy12g1981 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Lcy12g1981 605 Pfam PPR repeat 199 228 IPR002885 -
Lcy12g1981 605 Pfam PPR repeat 373 396 IPR002885 -
Lcy12g1981 605 Pfam PPR repeat 170 196 IPR002885 -
Lcy12g1981 605 Coils Coil 20 40 - -
Lcy12g1981 605 Gene3D Tetratricopeptide repeat domain 30 140 IPR011990 GO:0005515(InterPro)
Lcy12g1981 605 Gene3D Tetratricopeptide repeat domain 268 529 IPR011990 GO:0005515(InterPro)
Lcy12g1981 605 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 271 500 - -
Lcy12g1981 605 NCBIfam pentatricopeptide repeat 301 333 IPR002885 -
Lcy12g1981 605 NCBIfam pentatricopeptide repeat 99 130 IPR002885 -
Lcy12g1981 605 NCBIfam pentatricopeptide repeat 168 196 IPR002885 -
Lcy12g1981 605 NCBIfam pentatricopeptide repeat 373 396 IPR002885 -
Lcy12g1981 605 NCBIfam pentatricopeptide repeat 335 369 IPR002885 -
Lcy12g1981 605 Pfam E motif 415 477 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1981 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1981 Lcy-Chr12:41195629 Lcy2g0757 Lcy-Chr2:6693916 5.30E-159 dispersed
Lcy12g1981 Lcy-Chr12:41195629 Lcy7g0247 Lcy-Chr7:2149147 1.19E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .