Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1982 ATGCGGAACGAAGATGAAGGCTTCGAAGATTGGGACGCTGATTTCTTGGACCAACTCATCCAAGTCGAAGAGTTTGCTCTCTCCTCCACCTCCAATAATCCGATTCCGAGTTCTTCTTCTACCTTCCCGCCGCCGCCATTTCAACCGGAACCGCAGCATTTGGTGGAAGTGTTTCATGAACGTCCCATCAGTTATTCGCCTCCTCGAGAACTCTCTCAGAGGGCCACTGCTTCACGTTCTCACGCTGTTCGCTCTCCCAATGGCTTGGGCGAATGCGGTCCTTCTTCCTCGGCGCTGGCCCCGTGCTTGCCTCGCCCGGATGCTGCCAAAGAACTTGAAATTTGTAATTTGAAGGTTAGTTTAAGCGTTTGTGGCTATCGGCATCGTATTCATTATGTTAATTTATGGTCGCATGGTTTCTCAAGAAAGTGCTTAGAATTTAGAACTAGGTTTTGGATTGCTGAGCTCCGTTTTCTTTGTTCGTTTCTGCTCAAAATGTCTGCAAAGTGCGGCGTCTTTTTCTACCGGAAGGAAGGAGATGTACCTGGATTGTTTCGCATTCTTTCCTCGATCAAACACAGGGAGCTAGGACGCGTCTCAAAGCAACTCAAGGACCTGGAACAAGAGTGTGTTGAACTCAGGAAGAAAAGAGACAAAAAAGAGGAGCAGCTTAAAGTTGTCTCTTCCAATAAAGATGAGCAATGTATTAGCCATCATGGTTCAGAAAGTACAGATTCGAGAACCACAGGTAAAGATGGTAGGCATACTGGCAGGAAGAGGGAAGATCTTGCTGGTGATCTTGGTGGCCCTCACACTGTTACTTCTAGTTGTAAAGCCATCGGTGAACAGGGAGACAAAGCCCATAACTCTGTTGTAGAGAGAGCCAACGATGATTTACCTGCTTTTCACAAGCTCTCCAAGAAGTTGCAAGTCTTCTGGGTTCCTGAAAGTGACTCTAAGATGGGACAAAATTTGGTTTCGGAATTGCTCTTATCATGTGAAACAGATTTTCATGTGCTTTTTCGGTGCATTGGCATGGAGTTATCCCCTAAAGTTTCCGTGGATTCCTTGGCTGGTGGTAACTCTTCTGATGTAGCTTTAAAGCATCCTTTGCAGTTTCTTCATAGCCCAGAAGCTATAAAAGTATCTAACCTCTACACTGCCTTGACTAAGGTAAGTAATGGAATAGTAAAGATGGAGGCATTGTTTACTCCGTTACTTGATCTCTGTAATCTTGACAATGTTGCTGTAGTTCATAGATCTCTGCATATATTGCACATGTTTCTGAAACGCCTGTTGTGGTTGGAAAGGAGATCAGAAAGAAGGAAAACAGTCATGATTGAGGGACTTGGCTCTAGGAACAATGTTGTGGATTCTCATGGATCACCGAGTGCAGAAGGTGAAGAATTTGCTTTGGTCCACATGGATGAGGCATCTCGTGACAGCCATGCTCCAGCTGGCAGCAGACTCATTGGTGCTGAAATGCTGTGCAAGAACAGAAACTTGAATAAGAGTACAAATTTAGTTCCTCAAGTAAACTGGATGTCTTTGTTTGAGATGATGCATCAGGTTACTAAGGCACATAGTGCAGAATGTGTGAGGATTGAAGCAGTTTCAGTCATGAGTTTGATTCTGATGAGAAATAATACTTATACGGAGAGGGAGAAGTTTGGTCAGGCACTTTTATTTGATAGTGTAGTGGAGTTTATCAGAAAGGAATCTGGTTCAGCTATACAAAAGCATGCTGTGCGTCTTCTATTTCTGATACTAAACTGTCCTACATTTTTTGTCGCGTTCTGTGCTGGTTGCAAAGAGGCAGAAGCTATTGATGCTGCAAATGAAAATGTGAGATGCGCAGGAGGTTTCCAGAAATTCAGAACCATCCTTCATGGCTTGGCAGATTGTCTTACATGTTGTGGAAACGGTATTGAAGAAACCCACTCTTGCAAAAGCAGTCCCTGCAAAGTTCCTAACATATTTCCATTCAGTTCTTACTATTCCTGCTTGCGACCGTATGTTAAAAGCAGGAGACTCACTGTTTGCGACTTAACCCACGTGTTTGATGTTAGGTATTATCCCTTGTTCTTGCAGGAGTTGAAACTTAGAAGAAACACTGTTCTTTTACTCGCTTTTCTAGCATCATCTGGGAAAGCTGGCTTTGAGATTCTCATTAGCAACAAGCTACATACAGAGTCAAATTTTCTCACGTTGATTCTTCAAGTCGTGGTTTCAGAAGTCGAGCAAGAAAAAAAAGTTCCAGAGCCTGTAGAAATTCTCGAGGAAAGGGCCTTGCTGTTTCGTGAAGTGCTTATACTTCTTAATAGACTTGCGTCGCATTCATTATACTCGGCCACAGTCTTACGAGTGTTAACAAACAGCAGAGATGTGGCCAGCCTCACCATTGATGTAGCCAACAATTTGTCCAGAAGAAACAACAGAACTTGCCAGTTTGACAGCAAGAAAAGAAAGATGAGGGAATCTGAAGTTGTCGACTTAGCCCAGGTATTTAAGAAAAGAGTTCTTACATATTTGGGAAATAGCATACTATAA 2550 43.29 MRNEDEGFEDWDADFLDQLIQVEEFALSSTSNNPIPSSSSTFPPPPFQPEPQHLVEVFHERPISYSPPRELSQRATASRSHAVRSPNGLGECGPSSSALAPCLPRPDAAKELEICNLKVSLSVCGYRHRIHYVNLWSHGFSRKCLEFRTRFWIAELRFLCSFLLKMSAKCGVFFYRKEGDVPGLFRILSSIKHRELGRVSKQLKDLEQECVELRKKRDKKEEQLKVVSSNKDEQCISHHGSESTDSRTTGKDGRHTGRKREDLAGDLGGPHTVTSSCKAIGEQGDKAHNSVVERANDDLPAFHKLSKKLQVFWVPESDSKMGQNLVSELLLSCETDFHVLFRCIGMELSPKVSVDSLAGGNSSDVALKHPLQFLHSPEAIKVSNLYTALTKVSNGIVKMEALFTPLLDLCNLDNVAVVHRSLHILHMFLKRLLWLERRSERRKTVMIEGLGSRNNVVDSHGSPSAEGEEFALVHMDEASRDSHAPAGSRLIGAEMLCKNRNLNKSTNLVPQVNWMSLFEMMHQVTKAHSAECVRIEAVSVMSLILMRNNTYTEREKFGQALLFDSVVEFIRKESGSAIQKHAVRLLFLILNCPTFFVAFCAGCKEAEAIDAANENVRCAGGFQKFRTILHGLADCLTCCGNGIEETHSCKSSPCKVPNIFPFSSYYSCLRPYVKSRRLTVCDLTHVFDVRYYPLFLQELKLRRNTVLLLAFLASSGKAGFEILISNKLHTESNFLTLILQVVVSEVEQEKKVPEPVEILEERALLFREVLILLNRLASHSLYSATVLRVLTNSRDVASLTIDVANNLSRRNNRTCQFDSKKRKMRESEVVDLAQVFKKRVLTYLGNSIL 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41203821 41211997 + Maker00037886 Lcy12g1982 650045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1982 849 PANTHER ATR INTERACTING PROTEIN 5 650 IPR044952 GO:0006974(InterPro)
Lcy12g1982 849 MobiDBLite consensus disorder prediction 68 95 - -
Lcy12g1982 849 MobiDBLite consensus disorder prediction 69 83 - -
Lcy12g1982 849 MobiDBLite consensus disorder prediction 235 266 - -
Lcy12g1982 849 Coils Coil 196 230 - -
Lcy12g1982 849 MobiDBLite consensus disorder prediction 27 51 - -
Lcy12g1982 849 MobiDBLite consensus disorder prediction 222 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1982 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g761 . . Bda06g01239 . . Bpe07g00241 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0503 Cone12ag0504 . . . . Chy04g00135 . . . . . . . . Bma12g00242 Sed05g0248 . . . . . . . Cpe15g00183 Bhi05g00427 Tan07g2035 Cmetu04g1723 Lac11g2458 Hepe06g1809 . Lcy12g1982 Cla09g01078 Cam09g1135 Cec09g1140 Cco09g1160 . . Cre09g1097 . Csa03g04569 . Cme04g00156
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007127 2 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 5 1 35