Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1984 ATGGCAGTTTGTACAGTGTACACAACCCAATCCCTAAACTCAACCTTCTCATCAACAACAACAACAACAAAATCCCACTTGGGATTCCACCAAAAGCACCAGCAGCAACTGGTTTTCTTGAGCAGCAATGGGAAGAAATGGGGAAGCAGTAAAAGAGACGGTCACAGCAGCGAGACCAACCCTTATGTGATAACCTGCTCCGCGGGTGAGCAACAGACAGTGGTGATTGGTCTGGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTCATGAGGAGGCTGACAAGTGTTTTTGGAGGGGCAGCAGAGCCACCAAAGGGCGGTAACCCAGACTCAAACACACTCATCAGTGACACTACCACTGTGATATGTTTAGATGACTATCACTCATTGGACAGAACAGGGAGAAAAGAGAAGGGAGTCACAGCACTTGACCCAAAAGCCAATGATTTTGACCTCATGTATGAACAAGTAAAAGCAATTAAAAATGGTGTGGCTGTTGATAAGCCTATTTACAACCATGTCACTGGCCTTCTTGACCCTCCTGAGCTCATCAAACCTCCTAAAATCCTTGTCATTGAAGGCTTACACCCCATGTATGATTCAAGAGTAAGAGACCTGCTGGACTTCAGTATCTACTTGGACATCAGCAATGAAGTTAAATTTGCATGGAAAATTCAGAGGGACATGGCTGAGAGAGGACACAGTCTCGAAAGCATCAAAGCGAGTATCGAAGCCCGAAAACCCGACTTCGACGCCTATATCGACCCACAGAAGCAATATGCAGATGCAGTGATAGAAGTGCTGCCAACAAAACTGATTCCTGATGATAATGAAGGAAAAGTTTTGAGAGTAAGGTTGATAATGAAGGAAGGGGTGGAGTTTTTTAACCCAGTTTATTTGTTTGATGAAGGCTCTTCAATTTCATGGATTCCATGTGGAAGAAAGCTCACTTGCTCTTACCCTGGCATCAAATTCTCCTATGGCCCTGAAACTTACTATGGCCATGAGAGGTACGACCTATGTACCGGTGCTTCTGATGCAATACTCAAAGGTATCGGTACTGGAAATGGACGGCCAATTCGACAGGCTCGACGAGCTCATCTATGTCGAAAGCCATCTGAGCAACCTGTCGACAAAATTCTACGGCGAAGTGACTCAACAGATGCTGAAGCACTCGGACTTCCCTGGAAGCAACAACGGCACAGGCTTCTTCCAAACCATAGTCGGATTGAAGATCAGAGACCTGTACGAGCAGATATCCGCCAGCAAGGCCAAGGCGCTACAGGCCGCGAAAGCCTGAGGTTAGAGCGTTGA 1314 46.5 MAVCTVYTTQSLNSTFSSTTTTTKSHLGFHQKHQQQLVFLSSNGKKWGSSKRDGHSSETNPYVITCSAGEQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKNGVAVDKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTKLIPDDNEGKVLRVRLIMKEGVEFFNPVYLFDEGSSISWIPCGRKLTCSYPGIKFSYGPETYYGHERYDLCTGASDAILKGIGTGNGRPIRQARRAHLCRKPSEQPVDKILRRSDSTDAEALGLPWKQQRHRLLPNHSRIEDQRPVRADIRQQGQGATGRESLRLER 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41224286 41228727 + Maker00038024 Lcy12g1984 650047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1984 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 340 IPR027417 -
Lcy12g1984 437 ProSitePatterns Phosphoribulokinase signature. 224 237 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lcy12g1984 437 PRINTS Phosphoribulokinase family signature 189 207 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lcy12g1984 437 PRINTS Phosphoribulokinase family signature 224 241 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lcy12g1984 437 PRINTS Phosphoribulokinase family signature 80 97 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lcy12g1984 437 PRINTS Phosphoribulokinase family signature 242 265 IPR006082 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0008974(InterPro)
Lcy12g1984 437 PANTHER URIDINE KINASE 71 328 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Lcy12g1984 437 Gene3D - 70 308 IPR027417 -
Lcy12g1984 437 MobiDBLite consensus disorder prediction 403 437 - -
Lcy12g1984 437 Pfam Phosphoribulokinase / Uridine kinase family 75 273 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Lcy12g1984 437 MobiDBLite consensus disorder prediction 404 418 - -
Lcy12g1984 437 CDD PRK 75 336 - -
Lcy12g1984 437 FunFam Phosphoribulokinase 70 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1984 K00855 - - csv:101220055 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1984 Lcy-Chr12:41224286 Lcy6g2264 Lcy-Chr6:47289614 1.81E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64