Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1986 ATGGCACCGACCCTGACCGATCACTTCAGCCTTCCCACGCCAAAAAAACAAACTCTCCAGACAAGAAAAACTCCTCGTTCTGAACACTCCAACAAGTATCCTGAGTGGTATTCACCAGATACAGGAATCTATGGCAGTCTCCATTCCTCCAGAGACTTACCCTCCGACCCATTTCTTGACGTTGTCTCTTTCATCTTCTCCTTCCAACACAATGGACATTCAGCTTTCATCGATTCCTCATCTGGGCATTCAATTTCGTACAGAGAATTGTTTCCCATGGTCAAATCCGTGGCTTCTGGGCTTCACAAATTGGGCATTTCACAAGGAGATGTAGTTTTGCTTCTGATACCAAATTCCATTTTCTATCCCGTTCTTGTTTTGGGTGTTATGTATTTGGGAGCAGTCGTTACGACCATGTTTCCTCAAAGCAGTTCCTCAGAAATCAAGAAACGAATCAGTGATTGCAATGTGCGTCTGGCTTTGGCAATACCTCAGAAATTTGGGGATTTTGAAGCAGTGGGAATTCGGGCAATCGCAGTACCAGAAAATGTGAACTTGGGCTTGATGAAGTTGAAGCCTAAGGGATTTTCTTCTTTTTTTGAGCTTATTTCAGGACGGTTTGATTTGGACAAAAGACCAGTGATTAAACAGCAAGATACAGCTGCTATATTGTATTCTTCAGGTACTACTGGAGTGAGCAAAGGGGTTATGCTGTCACACAGAAATTTTATATCTATGGTCGAGCATTTTGTCAGGTTTGAAGCTTCACAGTATGAATATTTGACTACAGAGAATGTGTATTTAGCTGTTATACCAATGTTTCATATATACGGTCTCTCCCTTTTTGTGATGGGGTTACTGTCATTGGGCTCTAGTGTTGTTGTCATGAGCAAATTTGATATCAAAGAAGTGGTCAAGGCCATTGATAGATTTAAAGTCACACATTTTCCAGTTGTTCCTCCAATACTCACAGCTCTGGCCAAGACTGCAGAGAAAGTTGGTGTACATAGATTTCAGAGTTTGAAGCAAGTTTCTTGTGGGGCTGCTTCTTTGATCAAGAAGACCAGAGATGACTTTCTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGTCCACAGCTGTAGGAACTCGTGGCTTCAATACCAAAAAGGCTCAAAAGTATTCGTCAGTGGGACTTTTAGCTCCAAACATGGAAGCTAAAGTAGTTGATTGGGTTAGCGGATCTTTCATGCCTCCTGGTAAAACTGGGGAACTTCTGTTGCGCGGACCTGGTTTGATGAAAGGTTACTTGAATAATCCAGAGGCAACGATGTCCACAATAGACGAAGAAGAATGGCTACACACTGGAGACATCGTCTACTTTGACCAAGAGGGATACTTGTATGTTGTTGATCGTTTGAAGGAGGTTATAAAATACAAAGGCTTTCAGATTGCTCCTTCTGATTTAGAAGCTGTAGTGATCACACATCCAGAAGTTGTTGATGTTGCAGTAACAGCGGCCATTGATGAAGAATGTGGGGAGATTCCTGTGGCTTTTGTCGTCAAGAAGCCAGGAAGCAAACTCTCACAGAAAGATGTAATAGATTTTGTTGCTCAACAGGTTGCTCCATATAAAAAAGTCAGAGAAGTGGTTTTTACAGAAGCGATTCCGAAGTCTGCTGCTGGCAAAGTACTGCGCAGGGTACTGAAGAATCACTTGTCTTCAAAACTCTGA 1731 42.52 MAPTLTDHFSLPTPKKQTLQTRKTPRSEHSNKYPEWYSPDTGIYGSLHSSRDLPSDPFLDVVSFIFSFQHNGHSAFIDSSSGHSISYRELFPMVKSVASGLHKLGISQGDVVLLLIPNSIFYPVLVLGVMYLGAVVTTMFPQSSSSEIKKRISDCNVRLALAIPQKFGDFEAVGIRAIAVPENVNLGLMKLKPKGFSSFFELISGRFDLDKRPVIKQQDTAAILYSSGTTGVSKGVMLSHRNFISMVEHFVRFEASQYEYLTTENVYLAVIPMFHIYGLSLFVMGLLSLGSSVVVMSKFDIKEVVKAIDRFKVTHFPVVPPILTALAKTAEKVGVHRFQSLKQVSCGAASLIKKTRDDFLQALPHVDFIQGYGMTESTAVGTRGFNTKKAQKYSSVGLLAPNMEAKVVDWVSGSFMPPGKTGELLLRGPGLMKGYLNNPEATMSTIDEEEWLHTGDIVYFDQEGYLYVVDRLKEVIKYKGFQIAPSDLEAVVITHPEVVDVAVTAAIDEECGEIPVAFVVKKPGSKLSQKDVIDFVAQQVAPYKKVREVVFTEAIPKSAAGKVLRRVLKNHLSSKL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41239167 41255810 - Maker00037842 Lcy12g1986 650049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1986 576 SUPERFAMILY Acetyl-CoA synthetase-like 69 572 - -
Lcy12g1986 576 FunFam Long-chain-fatty-acid--CoA ligase FadD 50 473 - -
Lcy12g1986 576 FunFam 4-coumarate--CoA ligase 2 474 575 - -
Lcy12g1986 576 MobiDBLite consensus disorder prediction 1 32 - -
Lcy12g1986 576 Pfam AMP-binding enzyme C-terminal domain 488 562 IPR025110 -
Lcy12g1986 576 CDD 4CL 53 568 - -
Lcy12g1986 576 Gene3D - 474 575 IPR045851 -
Lcy12g1986 576 Pfam AMP-binding enzyme 70 436 IPR000873 -
Lcy12g1986 576 Gene3D - 54 473 IPR042099 -
Lcy12g1986 576 ProSitePatterns Putative AMP-binding domain signature. 223 234 IPR020845 -
Lcy12g1986 576 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 569 - GO:0005777(PANTHER)|GO:0006744(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1986 Lcy-Chr12:41239167 Lcy7g0614 Lcy-Chr7:5582729 1.18E-130 dispersed
Lcy12g1986 Lcy-Chr12:41239167 Lcy5g0304 Lcy-Chr5:2882684 2.33E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1986 K01904 - csv:101219578 897.501