Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1998 ATGTCGCTCCTCAGTAGATTCTTCTACAGAAGGCCCCCAGATGGGTTGCTGGAGTTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCCACTGAAGTATTGCCTGATGATATGTACCAAATATATCTGCATGAAATCGTAAATGAATTACATGAGGAATTCCCAGACTCGTCCTTCCTTGCATTTAATTTTCGTGAAGGAGAGAAAAGGAGCCAATTTTCAGAAAGGTTGTGTGAGTATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGTTGCCCTCTTCTTCCACTGTCCTTAATACAGCACTTCCTTCGTGTCTGTGAAAGTTGGCTTCTGCTTGGCAACCAACAAAATATCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTGGCATTTCTTTTGGCCAGCTTTTTGATATTTAGAAAACTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACACCGAGAAGCTCCCAAAGGGCTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTTTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGCTGCAGACCAGTTATTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACACAGATGATTTTCTCCATGCCCAAGAAGAACAAAGCCCTACGTCACTACCGTCAGGCAGAATGTGATGTGATTAAAATAGACGTCCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAATCAGAAAGGGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTATTGTTTGGGGAGATAGAAAGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGATTGATAGCAATGATGATGCTGCCTTGTGGCTACTCAAGAATCTTTCTGCCTTGACTGACGTGAAAGAATTGTCGAGACTGCAAAATAAAACAAGTTCATACTCTTCGCCAGCGGATTCTGAAGAGGAAAATAATACGTCCAGCACAGCCGATAGTTCAGATGAAGTATTTGATAGTATGACAAAGCCTTTAGTTGATTCAACTTCTGCCAATTTTACAATTCCAGCTATGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAATCTCCTCAAACTTTTGATGAATGTGAAGACAAGATCTGTTCGATTAAAGAATCTCAACCCTCTTCATCACCTCCACTAACTTCTTTTGTCTCCCCACCCTCTCCTATAAGTTCTTCTTTAATACCATCACCATTGTTGCCTCCATCTAATCTACCATCTACTGATGCTAGTGGGGAACTTGTCTCAAATAAAATAACACCTATGGTTAAAGTGATTCCTCCACCACCACCGCCGCCGCCGCCTTTTTCTCTATCTCATAAGGAACCTCATGTAGAAACTTCCATGAGTTCAGACTTGACCTCTGTAACAATGCATGGGAGACCCCCTCCACCCCCTCCACCTCCACCTCCACCTCCACCTCCTATTAGCAACAATCCTGTTACGACCTCTTTGACTCCTTCACTTTTGATGATTCCTAAATCTTCTAGTGCTCCTCCACCCCCACCTCCACCTCCCCTCCCAAAAATAGGTGGTGTTCCACCTCCACCTCCTATTCCAAAATCTTTTGGTGCTCCTTCACCTCCACCTCCACCTCCTCCTTTTATTCCACAATCTTCTAGTGTTCCTCCACCTCCGCCTCCGCCTCCACCTCCACTTCCAGTGCCAAAATCTTCTGGTGCTCCTCCACCTCCGCCTCCGGTTCCCAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTCCAAAATCTTCTAGTGCTCCTCCTCCCCCTCCTCCACCTCCTATTTCAAAGTCTTCTAGTGCTCTCCCACCTCCACCTCCACCTCCGCCTCCTATTCCAAAATTCTCTGGTGCTCCTCCACCTCCACCTCCACCTCCTATTTCGAAGTCTTCTAGTGCTCCTCCGCCTCCACCTCCTTTACCACAATCAAATCGTGGTGCGACACCAATTCCACCTCCTCCCCCACCTAAACCTCCCGGCGGTGAGCTACCAAGTCATGGTACTAAATCAATTAGGCCTCCTCCACCCCCTCCACCAACAAAGCCCTTCAATGCTCATCCTCCGACAAGTCATAGCGCTACACCAATGCCACCCCCTCCCCCTGGATCAAGAGGGTCAAATGTACCACCACCACCCCCTCCTTCTGTTGGGAGAGGGAAAGCTTCTCTAGGATCAACAACTCAAGCTAGAGGTCGAGTTGCTACAGGAGTTGGAAATGCTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAACCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGGCGTGGTTCCAACATCAACAAACCTGAAAAAGTGCAACTGATTGACTTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTTATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACATTGAAGGGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTTGAGCTAATGAAGGTCCCACGAATAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATAACCTTTTCTAGTCAGGTGAAAGATTTGAGATATAATTTGAGCACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACAATTCTTACACTGGGAAATGCATTAAACCAGGGTACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCCTTGCAGAGAAAATGCCGGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTGGAAGGTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCAGAAAATGACGGTGCTATCTCTGTTGGGTTCCAAAAGGTGCTGAAGAATTTTCTCGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAACGCAGATTCGTTGTCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTGTTTGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTGAAAGCGAAGTGA 3801 44.12 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDDMYQIYLHEIVNELHEEFPDSSFLAFNFREGEKRSQFSERLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGLLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYRQAECDVIKIDVQCLVQGDVVLECSHLESESEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEIESISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWIDSNDDAALWLLKNLSALTDVKELSRLQNKTSSYSSPADSEEENNTSSTADSSDEVFDSMTKPLVDSTSANFTIPAMVHSSELLSDKIGANEVNISSESPQTFDECEDKICSIKESQPSSSPPLTSFVSPPSPISSSLIPSPLLPPSNLPSTDASGELVSNKITPMVKVIPPPPPPPPPFSLSHKEPHVETSMSSDLTSVTMHGRPPPPPPPPPPPPPPISNNPVTTSLTPSLLMIPKSSSAPPPPPPPPLPKIGGVPPPPPIPKSFGAPSPPPPPPPFIPQSSSVPPPPPPPPPPLPVPKSSGAPPPPPPVPKSFGAPPPPPPPPPPKSSSAPPPPPPPPISKSSSALPPPPPPPPPIPKFSGAPPPPPPPPISKSSSAPPPPPPLPQSNRGATPIPPPPPPKPPGGELPSHGTKSIRPPPPPPPTKPFNAHPPTSHSATPMPPPPPGSRGSNVPPPPPPSVGRGKASLGSTTQARGRVATGVGNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVKDLRYNLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEGASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKIEKEAMKERSSVKAK 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41352171 41363869 + Maker00038109 Lcy12g1998 650061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1998 1266 Gene3D Formin, FH2 domain 862 1246 IPR042201 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 501 524 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 406 433 - -
Lcy12g1998 1266 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 913 927 - -
Lcy12g1998 1266 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 187 IPR029021 -
Lcy12g1998 1266 SUPERFAMILY Formin homology 2 domain (FH2 domain) 873 1254 - -
Lcy12g1998 1266 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Lcy12g1998 1266 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 580 601 - -
Lcy12g1998 1266 PANTHER FORMIN-J 773 1258 IPR051144 -
Lcy12g1998 1266 Coils Coil 1141 1168 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 491 868 - -
Lcy12g1998 1266 SMART PTEN_C2_2 198 338 IPR014020 -
Lcy12g1998 1266 FunFam Formin-like protein 860 1246 - -
Lcy12g1998 1266 Gene3D - 197 342 - -
Lcy12g1998 1266 SMART it6_source 582 1266 IPR015425 -
Lcy12g1998 1266 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
Lcy12g1998 1266 Pfam Formin Homology 2 Domain 865 1235 IPR015425 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 793 841 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 544 560 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 615 786 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 1237 1266 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 913 933 - -
Lcy12g1998 1266 ProSiteProfiles Formin homology-2 (FH2) domain profile. 860 1260 IPR015425 -
Lcy12g1998 1266 Coils Coil 1235 1258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1998 Lcy-Chr12:41352171 Lcy2g0173 Lcy-Chr2:1380744 3.77E-283 dispersed
Lcy12g1998 Lcy-Chr12:41352171 Lcy9g1889 Lcy-Chr9:43958041 5.56E-283 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1998 K28090 - csv:101217517 1001.5