Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g1998 ATGTCGCTCCTCAGTAGATTCTTCTACAGAAGGCCCCCAGATGGGTTGCTGGAGTTTGTTGAACGAGTATATATTTTTGATTCGTGCTTTTCCACTGAAGTATTGCCTGATGATATGTACCAAATATATCTGCATGAAATCGTAAATGAATTACATGAGGAATTCCCAGACTCGTCCTTCCTTGCATTTAATTTTCGTGAAGGAGAGAAAAGGAGCCAATTTTCAGAAAGGTTGTGTGAGTATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGTTGCCCTCTTCTTCCACTGTCCTTAATACAGCACTTCCTTCGTGTCTGTGAAAGTTGGCTTCTGCTTGGCAACCAACAAAATATCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTGGCATTTCTTTTGGCCAGCTTTTTGATATTTAGAAAACTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACACCGAGAAGCTCCCAAAGGGCTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTTTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTTGATTCTCAGAATGGCTGCAGACCAGTTATTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACACAGATGATTTTCTCCATGCCCAAGAAGAACAAAGCCCTACGTCACTACCGTCAGGCAGAATGTGATGTGATTAAAATAGACGTCCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAATCAGAAAGGGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTATTGTTTGGGGAGATAGAAAGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGATTGATAGCAATGATGATGCTGCCTTGTGGCTACTCAAGAATCTTTCTGCCTTGACTGACGTGAAAGAATTGTCGAGACTGCAAAATAAAACAAGTTCATACTCTTCGCCAGCGGATTCTGAAGAGGAAAATAATACGTCCAGCACAGCCGATAGTTCAGATGAAGTATTTGATAGTATGACAAAGCCTTTAGTTGATTCAACTTCTGCCAATTTTACAATTCCAGCTATGGTACATTCTTCTGAATTATTGTCTGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAATCTCCTCAAACTTTTGATGAATGTGAAGACAAGATCTGTTCGATTAAAGAATCTCAACCCTCTTCATCACCTCCACTAACTTCTTTTGTCTCCCCACCCTCTCCTATAAGTTCTTCTTTAATACCATCACCATTGTTGCCTCCATCTAATCTACCATCTACTGATGCTAGTGGGGAACTTGTCTCAAATAAAATAACACCTATGGTTAAAGTGATTCCTCCACCACCACCGCCGCCGCCGCCTTTTTCTCTATCTCATAAGGAACCTCATGTAGAAACTTCCATGAGTTCAGACTTGACCTCTGTAACAATGCATGGGAGACCCCCTCCACCCCCTCCACCTCCACCTCCACCTCCACCTCCTATTAGCAACAATCCTGTTACGACCTCTTTGACTCCTTCACTTTTGATGATTCCTAAATCTTCTAGTGCTCCTCCACCCCCACCTCCACCTCCCCTCCCAAAAATAGGTGGTGTTCCACCTCCACCTCCTATTCCAAAATCTTTTGGTGCTCCTTCACCTCCACCTCCACCTCCTCCTTTTATTCCACAATCTTCTAGTGTTCCTCCACCTCCGCCTCCGCCTCCACCTCCACTTCCAGTGCCAAAATCTTCTGGTGCTCCTCCACCTCCGCCTCCGGTTCCCAAATCTTTTGGTGCTCCCCCACCTCCACCTCCACCTCCACCTCCAAAATCTTCTAGTGCTCCTCCTCCCCCTCCTCCACCTCCTATTTCAAAGTCTTCTAGTGCTCTCCCACCTCCACCTCCACCTCCGCCTCCTATTCCAAAATTCTCTGGTGCTCCTCCACCTCCACCTCCACCTCCTATTTCGAAGTCTTCTAGTGCTCCTCCGCCTCCACCTCCTTTACCACAATCAAATCGTGGTGCGACACCAATTCCACCTCCTCCCCCACCTAAACCTCCCGGCGGTGAGCTACCAAGTCATGGTACTAAATCAATTAGGCCTCCTCCACCCCCTCCACCAACAAAGCCCTTCAATGCTCATCCTCCGACAAGTCATAGCGCTACACCAATGCCACCCCCTCCCCCTGGATCAAGAGGGTCAAATGTACCACCACCACCCCCTCCTTCTGTTGGGAGAGGGAAAGCTTCTCTAGGATCAACAACTCAAGCTAGAGGTCGAGTTGCTACAGGAGTTGGAAATGCTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAACCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGGCGTGGTTCCAACATCAACAAACCTGAAAAAGTGCAACTGATTGACTTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTTATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACATTGAAGGGTTATACAGGTGACAGAGAAATGCTTGGAAAGTGTGAGCAGTTTTTTCTTGAGCTAATGAAGGTCCCACGAATAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATAACCTTTTCTAGTCAGGTGAAAGATTTGAGATATAATTTGAGCACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACAATTCTTACACTGGGAAATGCATTAAACCAGGGTACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCCTTGCAGAGAAAATGCCGGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTGGAAGGTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCAGAAAATGACGGTGCTATCTCTGTTGGGTTCCAAAAGGTGCTGAAGAATTTTCTCGATACTGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAACGCAGATTCGTTGTCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTGTTTGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCCGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTGAAAGCGAAGTGA 3801 44.12 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDDMYQIYLHEIVNELHEEFPDSSFLAFNFREGEKRSQFSERLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGLLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYRQAECDVIKIDVQCLVQGDVVLECSHLESESEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEIESISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWIDSNDDAALWLLKNLSALTDVKELSRLQNKTSSYSSPADSEEENNTSSTADSSDEVFDSMTKPLVDSTSANFTIPAMVHSSELLSDKIGANEVNISSESPQTFDECEDKICSIKESQPSSSPPLTSFVSPPSPISSSLIPSPLLPPSNLPSTDASGELVSNKITPMVKVIPPPPPPPPPFSLSHKEPHVETSMSSDLTSVTMHGRPPPPPPPPPPPPPPISNNPVTTSLTPSLLMIPKSSSAPPPPPPPPLPKIGGVPPPPPIPKSFGAPSPPPPPPPFIPQSSSVPPPPPPPPPPLPVPKSSGAPPPPPPVPKSFGAPPPPPPPPPPKSSSAPPPPPPPPISKSSSALPPPPPPPPPIPKFSGAPPPPPPPPISKSSSAPPPPPPLPQSNRGATPIPPPPPPKPPGGELPSHGTKSIRPPPPPPPTKPFNAHPPTSHSATPMPPPPPGSRGSNVPPPPPPSVGRGKASLGSTTQARGRVATGVGNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKGYTGDREMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVKDLRYNLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEGASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKNFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKIEKEAMKERSSVKAK 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41352171 41363869 + Maker00038109 Lcy12g1998 650061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g1998 1266 Gene3D Formin, FH2 domain 862 1246 IPR042201 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 501 524 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 406 433 - -
Lcy12g1998 1266 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 913 927 - -
Lcy12g1998 1266 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 187 IPR029021 -
Lcy12g1998 1266 SUPERFAMILY Formin homology 2 domain (FH2 domain) 873 1254 - -
Lcy12g1998 1266 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Lcy12g1998 1266 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 580 601 - -
Lcy12g1998 1266 PANTHER FORMIN-J 773 1258 IPR051144 -
Lcy12g1998 1266 Coils Coil 1141 1168 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 491 868 - -
Lcy12g1998 1266 SMART PTEN_C2_2 198 338 IPR014020 -
Lcy12g1998 1266 FunFam Formin-like protein 860 1246 - -
Lcy12g1998 1266 Gene3D - 197 342 - -
Lcy12g1998 1266 SMART it6_source 582 1266 IPR015425 -
Lcy12g1998 1266 Pfam C2 domain of PTEN tumour-suppressor protein 198 338 IPR014020 -
Lcy12g1998 1266 Pfam Formin Homology 2 Domain 865 1235 IPR015425 -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 793 841 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 544 560 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 615 786 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 1237 1266 - -
Lcy12g1998 1266 MobiDBLite consensus disorder prediction 913 933 - -
Lcy12g1998 1266 ProSiteProfiles Formin homology-2 (FH2) domain profile. 860 1260 IPR015425 -
Lcy12g1998 1266 Coils Coil 1235 1258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g1998 K28090 - - csv:101217517 1001.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1998 Lcy-Chr12:41352171 Lcy2g0173 Lcy-Chr2:1380744 3.77E-283 dispersed
Lcy12g1998 Lcy-Chr12:41352171 Lcy9g1889 Lcy-Chr9:43958041 5.56E-283 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g1391 . 441 955 FH2 protein (formin) Gene Family AT3G25500 62.4 1.3e-161 568.2
Lcy8g0729 . 473 895 FH2 protein (formin) Gene Family AT3G25500 63.3 3.3e-141 500.4
Lcy2g2127 . 492 893 FH2 protein (formin) Gene Family AT3G25500 51.2 1.2e-103 375.6
Lcy12g2003 . 613 1092 FH2 protein (formin) Gene Family AT2G43800 58.1 9.0e-140 495.4
Lcy8g0729 . 473 911 FH2 protein (formin) Gene Family AT2G43800 54.6 4.1e-124 443.4
Lcy9g1230 . 460 609 FH2 protein (formin) Gene Family AT4G15200 64.9 2.1e-47 187.6
Lcy9g1230 . 464 900 FH2 protein (formin) Gene Family AT5G54650 68.9 5.1e-167 585.9
Lcy8g1463 . 1 347 FH2 protein (formin) Gene Family AT5G54650 61.5 1.0e-114 412.1
Lcy8g0729 . 29 914 FH2 protein (formin) Gene Family AT5G67470 56.9 3.7e-234 808.9
Lcy12g2003 . 605 1092 FH2 protein (formin) Gene Family AT5G67470 56.1 1.9e-129 461.1
Lcy7g1391 . 489 951 FH2 protein (formin) Gene Family AT5G67470 58.8 1.6e-128 458.0
Lcy2g2127 . 495 895 FH2 protein (formin) Gene Family AT5G67470 51.6 1.5e-105 381.7
Lcy7g0217 . 385 864 FH2 protein (formin) Gene Family AT1G59910 51.3 1.9e-124 444.5
Lcy8g0729 . 497 872 FH2 protein (formin) Gene Family AT5G48360 50.5 4.4e-90 330.1
Lcy9g1230 . 472 883 FH2 protein (formin) Gene Family AT3G05470 51.2 3.8e-106 383.6
Lcy8g0729 . 477 871 FH2 protein (formin) Gene Family AT3G05470 51.6 3.2e-105 380.6
Lcy12g1998 . 946 1257 FH2 protein (formin) Gene Family AT1G42980 50.5 6.9e-68 255.0
Lcy12g1998 . 1 1264 FH2 protein (formin) Gene Family AT1G31810 66.9 0.0e+00 1216.1
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT1G31810 53.2 2.2e-43 175.6
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT1G31810 60.3 4.7e-38 157.9
Lcy2g0552 . 1358 1679 FH2 protein (formin) Gene Family AT5G07650 74.2 6.3e-129 459.1
Lcy5g2518 . 985 1292 FH2 protein (formin) Gene Family AT5G07650 70.5 2.9e-118 423.7
Lcy2g0173 . 976 1294 FH2 protein (formin) Gene Family AT5G07650 62.2 6.2e-108 389.4
Lcy12g1998 . 930 1261 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lcy9g1889 . 1092 1397 FH2 protein (formin) Gene Family AT5G07650 61.9 1.5e-101 368.2
Lcy8g2223 . 43 217 FH2 protein (formin) Gene Family AT5G07650 60.0 8.5e-49 193.0
Lcy9g0003 . 47 186 FH2 protein (formin) Gene Family AT5G07650 63.6 1.2e-42 172.6
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07650 65.1 7.4e-37 153.3
Lcy2g0552 . 1285 1669 FH2 protein (formin) Gene Family AT5G07770 69.9 1.1e-141 501.1
Lcy5g2518 . 898 1292 FH2 protein (formin) Gene Family AT5G07770 62.6 1.2e-127 454.5
Lcy2g0173 . 899 1287 FH2 protein (formin) Gene Family AT5G07770 57.3 6.0e-116 415.6
Lcy12g1998 . 866 1255 FH2 protein (formin) Gene Family AT5G07770 55.8 5.1e-115 412.5
Lcy9g1889 . 1016 1389 FH2 protein (formin) Gene Family AT5G07770 56.1 1.4e-109 394.4
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT5G07770 55.6 4.1e-40 163.7
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07770 65.9 6.5e-38 156.4
Lcy9g1889 . 1008 1397 FH2 protein (formin) Gene Family AT3G32400 74.0 1.5e-160 563.5
Lcy2g0173 . 883 1296 FH2 protein (formin) Gene Family AT3G32400 66.3 5.0e-148 521.9
Lcy12g1998 . 866 1260 FH2 protein (formin) Gene Family AT3G32400 66.0 3.5e-141 499.2
Lcy2g0552 . 1285 1679 FH2 protein (formin) Gene Family AT3G32400 65.2 1.0e-140 497.7
Lcy5g2518 . 878 1298 FH2 protein (formin) Gene Family AT3G32400 58.8 2.7e-133 473.0
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT3G32400 53.2 9.7e-43 172.2
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT3G32400 61.9 2.9e-39 160.6
Lcy8g2223 . 47 215 FH2 protein (formin) Gene Family AT2G25050 53.8 3.0e-42 171.8
Lcy9g0003 . 47 167 FH2 protein (formin) Gene Family AT2G25050 62.8 6.9e-39 160.6
Lcy2g0552 . 1286 1679 FH2 protein (formin) Gene Family AT5G07780 63.3 1.6e-124 443.7
Lcy5g2518 . 909 1298 FH2 protein (formin) Gene Family AT5G07780 57.1 3.5e-111 399.4
Lcy12g1998 . 867 1256 FH2 protein (formin) Gene Family AT5G07780 52.7 5.1e-102 369.0
Lcy2g0173 . 906 1287 FH2 protein (formin) Gene Family AT5G07780 53.8 1.2e-100 364.4
Lcy9g1889 . 1017 1390 FH2 protein (formin) Gene Family AT5G07780 52.3 5.4e-96 349.0
Lcy2g0552 . 1 1688 FH2 protein (formin) Gene Family AT5G07740 60.7 0.0e+00 1102.8
Lcy8g2223 . 47 216 FH2 protein (formin) Gene Family AT5G07740 65.9 1.3e-51 203.4
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07740 72.2 2.6e-44 179.1
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07740 69.0 4.3e-39 161.8
Lcy2g0552 . 1357 1686 FH2 protein (formin) Gene Family AT5G07760 73.8 2.9e-127 453.8
Lcy5g2518 . 984 1298 FH2 protein (formin) Gene Family AT5G07760 69.6 3.0e-116 417.2
Lcy2g0173 . 975 1294 FH2 protein (formin) Gene Family AT5G07760 64.2 4.7e-109 393.3
Lcy12g1998 . 940 1261 FH2 protein (formin) Gene Family AT5G07760 61.3 2.8e-106 384.0
Lcy9g1889 . 1091 1405 FH2 protein (formin) Gene Family AT5G07760 61.4 2.7e-101 367.5
Lcy8g2223 . 47 217 FH2 protein (formin) Gene Family AT5G07760 62.6 1.6e-48 192.2
Lcy9g0003 . 47 172 FH2 protein (formin) Gene Family AT5G07760 73.0 2.8e-45 181.4
Lcy4g0011 . 46 165 FH2 protein (formin) Gene Family AT5G07760 69.0 6.0e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32