Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2003 ATGTTTGATTCTTTCTTCTTCTTCATTCTGTTAGTTCCCTGCAAATCTTCTGAAATTTCTGCCGGTGGCCGGAGATTGCTTCACCAGCCCTTTTTCCCACTTGATTCTGTTCCTCCGGCGGAGCCGCCGTCGCCTCCGGTGCCGCCACCGCCGAATCCCAAGTACCCATTTTCCACTACCCCTCCAGCAACTCCTGATGGGTCTCCATTCTTTCCGACGTATCCAGGAACACCTCCTCCTCCGACGCCGGCGAGTTTCGCTTCGTTTCCGGCTAATATTTCTTCTTTGATTCTTCCTCATTCGTCGCAGTCTGGGTCCAGCTCCAAGAAGCTTGTTCCGTTGGCCATTGCTGCGGTTGTTTCTGCTGTTTTGGTTGTCTGCATTGCCGGGTTTTTGTACTGGCGGCGTCGGCGGCGCGGCCGTGGGTTGGCCGATGATAAGACGTTCAGATCCGAAAATAGTAGCCGGCTGTGTCCGGTTCCGAATGTTGAAGTGGGTAATGGAATCCCTAAGTTGAGACATCCTTCTGCTACGAGCTCTGAGTTTCTGTATCTGGGGACTCTTGTGAACTCGAGAGGGATCGACGATCGTTCCGTCGGGGGAGCTCGTGTGGCTGATCCTAGGCCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGCTGAATTTCGGTCGGTCGAGTGAGAAGCAGAATGGTGGAAATGGAGAGGAGAGATCAATTGCAGATGAAGAGGAAGAGGAATTTTACTCTCCTAAAGGTTCTCTCGGCGCAATTGGCTCGGGATCTCGAAGAGTGCTTGCAACAATGGCGGCTGAAGATTTGCTTGGCAAAACCAGCGATTCGAGCTCCACTTCCTATTCCACATCCAGCGGTTCCGTTTCGCCGGCGAGATCACGTTCTAAAAGTCTCTCTCTATCTCCGCCGGGGAGCTTGAGCCCTAGAAGATCCGTTCAGAACGAATCTTCCAATTTCTCTGTTTCTGCTGCTGCAGCGACGGAGCAGCATTCGCCTCCTTTAACGCCGCCGCTTTCCCACGGCGGAGTGGAATCGGACGACGGCGGTAAATCCCATTGCCCTTCTCCCCTGCGTTTATCGACTGAGAAAGTGCCGGAGAAGAGCTCCACCGCATCTTCTTCCCGGAGATTTTCTAGTGTTTCAGTTCACAATGCGATGTTCCCACTTTCAACAACCGATAAAGATTTGGATAATCATGACGATACGAACAATAATCACGAAGATTCTCCAAGACAATCACGTAATTCAGATCCAGAAGAACAGTTTCCTTCTTCTCCTTGTTTATCTCCACTTTCAGATGGAATTTTAGGGCAAATTCCGATTCAATTACCGACAGTTTCAAACGTTCCCGATTCAGATTCTGATGCAAAACTCAAGCAATTTTCTTACTCATTTACTTCATCTTCACCTTCATCGTCGCCGGAGAGAGTGGTTTTGGACTCATCTCCATCAAGAACTTCCATTATTTCAGATCAAAACAGGTCGTCTCCACCATCACCGGAGAGAATTGTGATGAGTGATTCAGATTCATCAAAGAGAACTTTGGACCACTTTGATCAAGATTTTCAATCTTCTTCAGCTAACATCATTTCCACTGATGTGGGTCGACTGCAATCTCCTTCGGGAGCATCCGCCGCTCCTCCGCCACCACCACCACCTCCACCGCCACCACTGGCAGCACCCTTTCTGCCAGTACGTTGGGAAATGTCCATTTCCCCTTCTACACCAATGGACCAATCCATTCCAAGGGCACCTCCTCCATTAGTGCCTCCATTAAGGCCATTCATAATGGAGAATGTGAAAAATGTCTCACCAATTCAGTTGCCTTCCAGCAAAAGCAATGGTGAATCGTCTGAAGAAACTCCCAAGCCCAAGTTGAAGCCATTGCATTGGGACAAAGTAAGGGCCAGCTCTGATCGTGAGATGGTGTGGGATCAACTCAGATCAAGCTCTTTTAAAGTGAATGAGGAAATGATTGAGACTCTGTTTGTTGTGAACACTTCCAACTCGAAGGAGACAACTCCACGCCCTGTGCTTCCTACACCGAACCAAGAGATCGGAGTTCTCGATCCCAAAAAGTCGCAGAACATTGCGATTGCGCTGCGGGCACTTAATGTTACCATAGAAGAAGTTTGTGAAGCCCTTTTAGAAGGTATAGTAAAGGTTTCTTGGCTCCATGCTAAAGGCAATGCGGATGCACTTGGAACAGAGCTACTTGAAAGTTTATTGAAGATGGCTCCAACAAAAGAAGAAGAACGTAAACTAAAGGCATCCAAGGATTTCTCACCTACCAAGCTTGGCCCTGCTGAGAAATTTTTGAAGGCAGTCCTTGATGTTCCTTTTGCATTTAAAAGGGTGGATGCAATGCTTTACATTGCAAATTTCGAGTCCGAGACTGAGTACTTAAAGAAGTCATTCGAAAATCTCGAGATTTTGATGTCAATCCGTTTTCTCGATTCGCAGACTGCTTGCGAGGAATTGAGGAACAGCAGGATGTTCTTAAAACTTTTGGAAGCTGTGCTCAAGACGGGGAATCGCATGAACGTTGGCACCAACCGTGGCGATGCCCACGCCTTCAAACTCGACACACTTCTGAAGCTCGTCGATGTCAAGGGTGCAGATGGGAAAACCACTCTTCTGCACTTTGTCGTACAAGAAATCATAAGAAGTGAAGGAGCCCGTCTTTGTAGCACAAGTCAAACTCCAAACTCCAACGTGAGCGACGATGTCAAATGCAGGAAACTCGGCCTGCAAGTTGTTTCAGGTCTCAGCTCGGAGCTCACCAACGTAAAGAAGGCAGCGTCGATGGATTCCGACGTGCTCAGCGGCGAGGTCATCAAGCTCTCCAGAGGGCTCGACAACATCAGGGAGGTTCTACGTCTGAACGAAGCAGACGGGCCAAACGAAAGCACAGAAAAGTTCTCAGAGTCAATGAGCAGATTCTTGAAAATGGCAGAAGAGGAGATCATCAGAATCCAAGCCCATGAAAGTGTTGCATTATCTCTGGTAAAGGAGATCACAGAGTACTTCCATGGAAACTCTGCCAAAGAAGAAGCTCATCCATTCAGAATTTTCATGGTGGTGAGAGATTTTCTAACGATCCTGGATGGAGTCTGCAAGGAAGTCGGGATGATAAACGAGCGAACGATCATAAGTTCGGCGCATAAATTTCCAGTTCCAGTGAATCCAACATTACCACAAGCATTCCAAGCTCATCATAGAGTGCAGAAATACAATTCATCTGATGAAGAAAGTGAATCTCCATAG 3282 48.14 MFDSFFFFILLVPCKSSEISAGGRRLLHQPFFPLDSVPPAEPPSPPVPPPPNPKYPFSTTPPATPDGSPFFPTYPGTPPPPTPASFASFPANISSLILPHSSQSGSSSKKLVPLAIAAVVSAVLVVCIAGFLYWRRRRRGRGLADDKTFRSENSSRLCPVPNVEVGNGIPKLRHPSATSSEFLYLGTLVNSRGIDDRSVGGARVADPRPLDSPELHPLPPLNFGRSSEKQNGGNGEERSIADEEEEEFYSPKGSLGAIGSGSRRVLATMAAEDLLGKTSDSSSTSYSTSSGSVSPARSRSKSLSLSPPGSLSPRRSVQNESSNFSVSAAAATEQHSPPLTPPLSHGGVESDDGGKSHCPSPLRLSTEKVPEKSSTASSSRRFSSVSVHNAMFPLSTTDKDLDNHDDTNNNHEDSPRQSRNSDPEEQFPSSPCLSPLSDGILGQIPIQLPTVSNVPDSDSDAKLKQFSYSFTSSSPSSSPERVVLDSSPSRTSIISDQNRSSPPSPERIVMSDSDSSKRTLDHFDQDFQSSSANIISTDVGRLQSPSGASAAPPPPPPPPPPPLAAPFLPVRWEMSISPSTPMDQSIPRAPPPLVPPLRPFIMENVKNVSPIQLPSSKSNGESSEETPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEEMIETLFVVNTSNSKETTPRPVLPTPNQEIGVLDPKKSQNIAIALRALNVTIEEVCEALLEGIVKVSWLHAKGNADALGTELLESLLKMAPTKEEERKLKASKDFSPTKLGPAEKFLKAVLDVPFAFKRVDAMLYIANFESETEYLKKSFENLEILMSIRFLDSQTACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRSEGARLCSTSQTPNSNVSDDVKCRKLGLQVVSGLSSELTNVKKAASMDSDVLSGEVIKLSRGLDNIREVLRLNEADGPNESTEKFSESMSRFLKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTILDGVCKEVGMINERTIISSAHKFPVPVNPTLPQAFQAHHRVQKYNSSDEESESP 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41424567 41428957 + Maker00038045 Lcy12g2003 650066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 610 631 - -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 196 259 - -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 276 339 - -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 276 440 - -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 398 420 - -
Lcy12g2003 1093 PANTHER FORMIN-RELATED 79 1088 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 540 567 - -
Lcy12g2003 1093 SUPERFAMILY Formin homology 2 domain (FH2 domain) 552 1051 - -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 38 77 - -
Lcy12g2003 1093 Gene3D Formin, FH2 domain 626 1061 IPR042201 -
Lcy12g2003 1093 Pfam Formin Homology 2 Domain 623 1040 IPR015425 -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 548 567 - -
Lcy12g2003 1093 ProSiteProfiles Formin homology-2 (FH2) domain profile. 621 1066 IPR015425 -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 367 393 - -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 469 520 - -
Lcy12g2003 1093 SMART it6_source 621 1055 IPR015425 -
Lcy12g2003 1093 MobiDBLite consensus disorder prediction 469 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2003 Lcy-Chr12:41424567 Lcy8g0729 Lcy-Chr8:26920107 3.83E-156 dispersed
Lcy12g2003 Lcy-Chr12:41424567 Lcy7g1391 Lcy-Chr7:21760863 1.70E-189 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2003 K28090 - csv:101211678 1584.7