Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2016 ATGGCGAAGACGGGCGTGTTTGATTCCAATCCTACAGTCATGGGGAAGGCGACTGAGCTGAAGAGGGAGCTACAGAGACTCATCGTGGCTATAATTGATGACGATAATTACTCCACCGACACCATCGATCATGCTAAAGAGATTCTCTGTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCGCGCTCTTCGAATCTCTACGAGAATCTCATTTGCCCTGATGAATTCCGCTGTCCGCTTTCTCGAGAGCTCATGAGAGATCCTGTTGTTGTCTCTTCTGGCGAGACGTACGACAGACCCTTCATAAATAAATGGTTAAAATCAGGAAACCGAACGTGCCCCCGAACTCAGCAAGTTCTTTCGCACACGAACCTCACTCCGAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTACAAGTCGGGGAATTGAGTTGCAAGATCGTGTTCAATATCTTGATGACGATGTAATAACGGAGGCTGATAGAGACCGTTTTCTTACGTTGATAGAGAAAATGTCTACGACATTATCTGAACAGAAAGAAGCTGCTAAGGAGCTTCGGATGTTGACGAAGCGGATGCCCTCATTTCGAGCACTTTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTAGTATTCATGCGGATCTGCAAGAAGATGTGATCACGACCCTCTTGAATCTGTCAATCCATGACAACAACAAGAAGCTTGTTGCTGAAACTCCCAAGGTAGTACCTCTTCTAATGGAAGCGTTGAGATCGGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTTTTTACTTTGTCAGCTCTCGACTCAAACAAAGCACTCATCGGGAAAGCGGGTGCCTTGAAACCACTTATCGACCTTTTAGACGAGGGACATCCATTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATTATTCATGAAAATAAAGGAAGAGCTGTTCGAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATCATGAACCAAATGCACGTCGACGAGTTGTTGGCTATTCTTGCAATGCTTTCAAACCATCCGAAAGCTATCGAGGAAATGGGAGAACTTGGAGCTGTTCCTTTCTTGCTCAGAATTATCAGGGAAAATGCTTGTTCACGTAACAAGGAGAATTGCATTGTGATCATCCACGCTATCTGCTTATACGATCGAACCAAGTGGAAGGACATGAGGGAGGAGGAGAAATGCTATCGAACTATCTCTGAACTTGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTCGAAAGACTGAACAGGGCAGTTAATATGACCCATACCGCATAA 1371 45.0 MAKTGVFDSNPTVMGKATELKRELQRLIVAIIDDDNYSTDTIDHAKEILCALKELKLRKRSRSSNLYENLICPDEFRCPLSRELMRDPVVVSSGETYDRPFINKWLKSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVQYLDDDVITEADRDRFLTLIEKMSTTLSEQKEAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSIHADLQEDVITTLLNLSIHDNNKKLVAETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKALIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCIIHENKGRAVRDGAVRVLLKKIMNQMHVDELLAILAMLSNHPKAIEEMGELGAVPFLLRIIRENACSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRAVNMTHTA 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41553434 41556534 + Maker00038119 Lcy12g2016 650079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2016 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g2016 456 PANTHER U BOX DOMAIN-CONTAINING 40 447 - -
Lcy12g2016 456 SMART Ubox_2 75 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g2016 456 CDD RING-Ubox_PUB 73 125 IPR045210 -
Lcy12g2016 456 FunFam RING-type E3 ubiquitin transferase 71 145 - -
Lcy12g2016 456 Pfam U-box domain 73 142 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g2016 456 SUPERFAMILY ARM repeat 178 446 IPR016024 -
Lcy12g2016 456 Coils Coil 170 190 - -
Lcy12g2016 456 FunFam RING-type E3 ubiquitin transferase 156 452 - -
Lcy12g2016 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Lcy12g2016 456 SMART arm_5 242 283 IPR000225 GO:0005515(InterPro)
Lcy12g2016 456 SMART arm_5 284 324 IPR000225 GO:0005515(InterPro)
Lcy12g2016 456 SMART arm_5 364 405 IPR000225 GO:0005515(InterPro)
Lcy12g2016 456 SUPERFAMILY RING/U-box 72 148 - -
Lcy12g2016 456 Pfam Armadillo/beta-catenin-like repeat 286 323 IPR000225 GO:0005515(InterPro)
Lcy12g2016 456 Gene3D - 165 453 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2016 Lcy-Chr12:41553434 Lcy5g1804 Lcy-Chr5:40796872 9.36E-46 dispersed
Lcy12g2016 Lcy-Chr12:41553434 Lcy4g1406 Lcy-Chr4:34663840 1.39E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2016 K27971 - csv:101215688 791.571