Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g2017 | ATGGGGCCGGGCATGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTAAGAAAAGATGGAAACCACTATTTTCAGAAGGGTCGAATTGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCTGTTTATTTGACCAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTTGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATCGCAATTCTGTTAAGGCACATTATATGTTAGGACTAGCATTAATACAAAATAAAGAGTATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAAAGCAAAATACAGGGAGTGGGAACAATCATCCACCAAACGTTCATGGGAATTGCAGACCTTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGTCTGAACTCGAAGGGTTCGTAGATGAAGCCAGAATTGCTCATCGGAAACAATTAAATTCTCTTAGAAGTGTGTTTGAAAAAGTTGGAGAGGCGGATGCGCCGTCTGAGGTGCCTGATTATCTCTGTTGTAAAATCACACTCGATATTCTTCGTGATCCTGTTATTACTCCAAGTGGAGTTACGTACGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTGGGTAACTTTGATCCCATAACAAGGGAGCTGCTCAATGAGTCACAGCTAGTACCAAACTTAGCCATAAAGGAAGCAGTACAAGCATTTCTAGATAAGCATGGATGGGCTTATAATACTGATTAA | 846 | 44.21 | MGPGMALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDRNSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYREWEQSSTKRSWELQTLKEACEAALEQKYFLDQSELEGFVDEARIAHRKQLNSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLNESQLVPNLAIKEAVQAFLDKHGWAYNTD | 281 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41562284 | 41568065 | - | Maker00037901 | Lcy12g2017 | 650080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g2017 | 281 | SMART | Ubox_2 | 207 | 270 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy12g2017 | 281 | CDD | RING-Ubox_CHIP | 204 | 274 | IPR045202 | - | |
Lcy12g2017 | 281 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 8 | 279 | - | GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER) | |
Lcy12g2017 | 281 | Gene3D | Tetratricopeptide repeat domain | 8 | 144 | IPR011990 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | Pfam | Tetratricopeptide repeat | 24 | 46 | IPR019734 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | Pfam | U-box domain | 204 | 276 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy12g2017 | 281 | ProSiteProfiles | TPR repeat profile. | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | SUPERFAMILY | RING/U-box | 198 | 278 | - | - | |
Lcy12g2017 | 281 | ProSiteProfiles | TPR repeat profile. | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | SUPERFAMILY | TPR-like | 8 | 134 | IPR011990 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | SMART | tpr_5 | 82 | 115 | IPR019734 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | SMART | tpr_5 | 48 | 81 | IPR019734 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | SMART | tpr_5 | 14 | 47 | IPR019734 | GO:0005515(InterPro) | |
Lcy12g2017 | 281 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 280 | IPR013083 | - | |
Lcy12g2017 | 281 | Pfam | Anaphase-promoting complex, cyclosome, subunit 3 | 50 | 108 | - | - | |
Lcy12g2017 | 281 | ProSiteProfiles | U-box domain profile. | 203 | 277 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g2017 | Lcy-Chr12:41562284 | Lcy5g2618 | Lcy-Chr5:49001279 | 8.08E-07 | transposed | |
Lcy12g2017 | Lcy-Chr12:41562284 | Lcy13g0695 | Lcy-Chr13:10035141 | 7.25E-07 | transposed | |
Lcy12g2017 | Lcy-Chr12:41562284 | Lcy5g0496 | Lcy-Chr5:5412535 | 8.08E-07 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g2017 | K09561 | - | csv:101215457 | 538.11 |