Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2017 ATGGGGCCGGGCATGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTAAGAAAAGATGGAAACCACTATTTTCAGAAGGGTCGAATTGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCTGTTTATTTGACCAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTTGAGGAGGACTGTCGGAGAGCTATTCAGCTTGATCGCAATTCTGTTAAGGCACATTATATGTTAGGACTAGCATTAATACAAAATAAAGAGTATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAAAGCAAAATACAGGGAGTGGGAACAATCATCCACCAAACGTTCATGGGAATTGCAGACCTTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGTCTGAACTCGAAGGGTTCGTAGATGAAGCCAGAATTGCTCATCGGAAACAATTAAATTCTCTTAGAAGTGTGTTTGAAAAAGTTGGAGAGGCGGATGCGCCGTCTGAGGTGCCTGATTATCTCTGTTGTAAAATCACACTCGATATTCTTCGTGATCCTGTTATTACTCCAAGTGGAGTTACGTACGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTGGGTAACTTTGATCCCATAACAAGGGAGCTGCTCAATGAGTCACAGCTAGTACCAAACTTAGCCATAAAGGAAGCAGTACAAGCATTTCTAGATAAGCATGGATGGGCTTATAATACTGATTAA 846 44.21 MGPGMALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDRNSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYREWEQSSTKRSWELQTLKEACEAALEQKYFLDQSELEGFVDEARIAHRKQLNSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLNESQLVPNLAIKEAVQAFLDKHGWAYNTD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41562284 41568065 - Maker00037901 Lcy12g2017 650080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2017 281 SMART Ubox_2 207 270 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g2017 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Lcy12g2017 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 279 - GO:0000209(PANTHER)|GO:0005737(PANTHER)|GO:0006515(PANTHER)|GO:0043161(PANTHER)|GO:0045862(PANTHER)|GO:0051087(PANTHER)|GO:0061630(PANTHER)|GO:0071218(PANTHER)
Lcy12g2017 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515(InterPro)
Lcy12g2017 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515(InterPro)
Lcy12g2017 281 Pfam U-box domain 204 276 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy12g2017 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515(InterPro)
Lcy12g2017 281 SUPERFAMILY RING/U-box 198 278 - -
Lcy12g2017 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515(InterPro)
Lcy12g2017 281 SUPERFAMILY TPR-like 8 134 IPR011990 GO:0005515(InterPro)
Lcy12g2017 281 SMART tpr_5 82 115 IPR019734 GO:0005515(InterPro)
Lcy12g2017 281 SMART tpr_5 48 81 IPR019734 GO:0005515(InterPro)
Lcy12g2017 281 SMART tpr_5 14 47 IPR019734 GO:0005515(InterPro)
Lcy12g2017 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Lcy12g2017 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Lcy12g2017 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2017 Lcy-Chr12:41562284 Lcy5g2618 Lcy-Chr5:49001279 8.08E-07 transposed
Lcy12g2017 Lcy-Chr12:41562284 Lcy13g0695 Lcy-Chr13:10035141 7.25E-07 transposed
Lcy12g2017 Lcy-Chr12:41562284 Lcy5g0496 Lcy-Chr5:5412535 8.08E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2017 K09561 - csv:101215457 538.11