Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2032 ATGGGTGGTGGCCGCACTTTGTACACTTTGGCTGAGGTTGCCTCCCACGACAATCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTACGATGTAACAAAATTCCTCGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTCGGGCACAGTAGCGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACGATTCCTGCAAAAAGAAAGTACACTCCGCCAAAGCAGCCCCTATACAACCAAGACAAGACCCCAGAATTCATTATCAAGGTCCTCCAGGTTCTTGCTCCCCTGGTAATTTTGGGTTTGGCCTTTGGCATCCACCTCTATACCAAAACAACTTAA 405 47.65 MGGGRTLYTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPAKRKYTPPKQPLYNQDKTPEFIIKVLQVLAPLVILGLAFGIHLYTKTT 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41663371 41673868 + Maker00037988 Lcy12g2032 650095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2032 134 PANTHER CYTOCHROME B5 6 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy12g2032 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lcy12g2032 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lcy12g2032 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lcy12g2032 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lcy12g2032 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lcy12g2032 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lcy12g2032 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 91 IPR036400 -
Lcy12g2032 134 Gene3D - 4 86 IPR036400 -
Lcy12g2032 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Lcy12g2032 134 SMART Cyt_b5_2 8 81 IPR001199 -
Lcy12g2032 134 FunFam Cytochrome b5 type B 4 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2032 K23490 - - csv:101212882 257.684
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2032 Lcy-Chr12:41663371 Lcy3g0069 Lcy-Chr3:1833861 6.89E-46 dispersed
Lcy11g1769 Lcy-Chr11:41500761 Lcy12g2032 Lcy-Chr12:41663371 1.05E-65 wgd
Lcy12g2032 Lcy-Chr12:41663371 Lcy13g0455 Lcy-Chr13:5422322 3.21E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
Lcy11g1769 . 1 133 NADPH P450 reductases AT5G53560 66.9 1.0e-50 196.8
Lcy13g0455 . 1 146 NADPH P450 reductases AT5G53560 61.0 3.9e-47 184.9
Lcy3g0069 . 6 126 NADPH P450 reductases AT5G53560 73.6 2.8e-45 178.7
Lcy12g2032 . 1 135 NADPH P450 reductases AT5G53560 61.5 4.8e-45 177.9
Lcy11g1769 . 1 132 NADPH P450 reductases AT5G48810 64.9 3.1e-47 185.3
Lcy12g2032 . 1 133 NADPH P450 reductases AT5G48810 60.7 5.0e-45 177.9
Lcy13g0455 . 1 144 NADPH P450 reductases AT5G48810 56.8 5.5e-44 174.5
Lcy11g1769 . 22 135 NADPH P450 reductases AT2G32720 85.1 3.4e-51 198.4
Lcy13g0455 . 40 144 NADPH P450 reductases AT2G32720 81.9 5.7e-46 181.0
Lcy12g2032 . 22 133 NADPH P450 reductases AT2G32720 71.4 2.5e-41 165.6
Lcy3g0069 . 18 124 NADPH P450 reductases AT2G32720 65.4 4.4e-38 154.8
Lcy13g1645 . 1 130 NADPH P450 reductases AT1G26340 61.2 4.2e-41 164.9
Lcy5g0764 . 2 329 NADPH P450 reductases AT5G17770 66.5 5.6e-120 427.9
Lcy8g2198 . 31 365 NADPH P450 reductases AT5G17770 57.0 3.1e-102 369.0
Lcy1g1745 . 89 228 NADPH P450 reductases AT5G17770 85.7 1.4e-67 253.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156