Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2032 ATGGGTGGTGGCCGCACTTTGTACACTTTGGCTGAGGTTGCCTCCCACGACAATCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTACGATGTAACAAAATTCCTCGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGACGTCGGGCACAGTAGCGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACGATTCCTGCAAAAAGAAAGTACACTCCGCCAAAGCAGCCCCTATACAACCAAGACAAGACCCCAGAATTCATTATCAAGGTCCTCCAGGTTCTTGCTCCCCTGGTAATTTTGGGTTTGGCCTTTGGCATCCACCTCTATACCAAAACAACTTAA 405 47.65 MGGGRTLYTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPAKRKYTPPKQPLYNQDKTPEFIIKVLQVLAPLVILGLAFGIHLYTKTT 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41663371 41673868 + Maker00037988 Lcy12g2032 650095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2032 134 PANTHER CYTOCHROME B5 6 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lcy12g2032 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lcy12g2032 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lcy12g2032 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lcy12g2032 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lcy12g2032 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lcy12g2032 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lcy12g2032 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 91 IPR036400 -
Lcy12g2032 134 Gene3D - 4 86 IPR036400 -
Lcy12g2032 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Lcy12g2032 134 SMART Cyt_b5_2 8 81 IPR001199 -
Lcy12g2032 134 FunFam Cytochrome b5 type B 4 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2032 Lcy-Chr12:41663371 Lcy3g0069 Lcy-Chr3:1833861 6.89E-46 dispersed
Lcy11g1769 Lcy-Chr11:41500761 Lcy12g2032 Lcy-Chr12:41663371 1.05E-65 wgd
Lcy12g2032 Lcy-Chr12:41663371 Lcy13g0455 Lcy-Chr13:5422322 3.21E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2032 K23490 - csv:101212882 257.684