Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy12g2053 | ATGGCGGTTTCTTCTCTTAGAGTATTACGGTTCTCATCGGCTTCTTCGTTGCTCTTCCTTCTTCTCAACGTCCTCTTCGTTCATTCCAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACCGGTATGTTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGGATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCCTGCGGGACAGGAAATCCAATTGATGATTGTTGGCGCTGTGACCCACGTTGGCAACTTCGCCGAAAGCACTTGGCAGATTGCGGCATTGGGTTCGGTCGTAACGCTGTCGGTGGCCGTGATGGGCGATACTACGTCGTCTCCGATCCCGGCGACGATGACCCTGTCAATCCCAGACCAGGCACTCTTCGTCATGCTGTGATTCAAGACAGGCCACTGTGGATTGTGTTCAAAAGAGACATGGTCATCACTCTGAAGCAAGAACTGATCATGAACAGCTTCAAGACAATCGATGCCCGTGGTGCCAATGTCCACATTGCTTATGGGGCTTGTATTACAATCCAATTCATTACCAATGTCATTATTCATGGCCTGCACATTCATGACTGCAAGCCAACTGGGAACGCCATGGTTCGAAGCTCCCCTAGTCACTATGGATGGAGGACAATGGCTGATGGCGATGGCATTTCCATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTGCTGATGGGCTCATTGATGCTGTGATGGGATCTACTGCCATTACCATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTTTTGGGACATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGACACGTGGAACGGCGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTGGGAGCCAAATCCTCTTCCTTGGTAGGCTCCATTACTTCAAGTGCAGGTGCCCTTTCTTGTCGTAGGGGATACCGTTGTTAA | 1311 | 47.29 | MAVSSLRVLRFSSASSLLFLLLNVLFVHSSFAGDERLQSFNSSSMADRYVKNEHAVDNPEEIASMVDLRIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSSAGALSCRRGYRC | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41846793 | 41852101 | + | Maker00038284 | Lcy12g2053 | 650116 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy12g2053 | 436 | SMART | amb_all | 162 | 359 | IPR002022 | - | |
Lcy12g2053 | 436 | SUPERFAMILY | Pectin lyase-like | 65 | 431 | IPR011050 | - | |
Lcy12g2053 | 436 | FunFam | Pectate lyase | 87 | 429 | - | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 134 | 159 | IPR018082 | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 234 | 255 | IPR018082 | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 336 | 355 | IPR018082 | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 110 | 127 | IPR018082 | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 407 | 430 | IPR018082 | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 170 | 186 | IPR018082 | - | |
Lcy12g2053 | 436 | PRINTS | Pollen allergen Amb family signature | 378 | 402 | IPR018082 | - | |
Lcy12g2053 | 436 | Pfam | Pectate lyase | 182 | 351 | IPR002022 | - | |
Lcy12g2053 | 436 | Gene3D | - | 87 | 429 | IPR012334 | - | |
Lcy12g2053 | 436 | PANTHER | PECTATE LYASE 18-RELATED | 27 | 433 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g2053 | Lcy-Chr12:41846793 | Lcy5g2168 | Lcy-Chr5:44640219 | 4.69E-212 | dispersed | |
Lcy10g1880 | Lcy-Chr10:42959838 | Lcy12g2053 | Lcy-Chr12:41846793 | 4.77E-213 | transposed | |
Lcy13g1730 | Lcy-Chr13:36269656 | Lcy12g2053 | Lcy-Chr12:41846793 | 4.65E-215 | transposed | |
Lcy11g1745 | Lcy-Chr11:41250075 | Lcy12g2053 | Lcy-Chr12:41846793 | 6.47E-253 | wgd | |
Lcy12g2053 | Lcy-Chr12:41846793 | Lcy13g0445 | Lcy-Chr13:5232370 | 1.34E-250 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy12g2053 | K01728 | - | csv:101207204 | 826.239 |