Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy12g2053 ATGGCGGTTTCTTCTCTTAGAGTATTACGGTTCTCATCGGCTTCTTCGTTGCTCTTCCTTCTTCTCAACGTCCTCTTCGTTCATTCCAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACCGGTATGTTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGGATTCGCAATAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCCTGCGGGACAGGAAATCCAATTGATGATTGTTGGCGCTGTGACCCACGTTGGCAACTTCGCCGAAAGCACTTGGCAGATTGCGGCATTGGGTTCGGTCGTAACGCTGTCGGTGGCCGTGATGGGCGATACTACGTCGTCTCCGATCCCGGCGACGATGACCCTGTCAATCCCAGACCAGGCACTCTTCGTCATGCTGTGATTCAAGACAGGCCACTGTGGATTGTGTTCAAAAGAGACATGGTCATCACTCTGAAGCAAGAACTGATCATGAACAGCTTCAAGACAATCGATGCCCGTGGTGCCAATGTCCACATTGCTTATGGGGCTTGTATTACAATCCAATTCATTACCAATGTCATTATTCATGGCCTGCACATTCATGACTGCAAGCCAACTGGGAACGCCATGGTTCGAAGCTCCCCTAGTCACTATGGATGGAGGACAATGGCTGATGGCGATGGCATTTCCATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTAGCTGTGCTGATGGGCTCATTGATGCTGTGATGGGATCTACTGCCATTACCATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTTTTGGGACATAGTGACTCTTATGTTAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACAAAGAGAGTCGACACGTGGAACGGCGTATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCCTCAAGCTTGGGAGCCAAATCCTCTTCCTTGGTAGGCTCCATTACTTCAAGTGCAGGTGCCCTTTCTTGTCGTAGGGGATACCGTTGTTAA 1311 47.29 MAVSSLRVLRFSSASSLLFLLLNVLFVHSSFAGDERLQSFNSSSMADRYVKNEHAVDNPEEIASMVDLRIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGVWKHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSSAGALSCRRGYRC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41846793 41852101 + Maker00038284 Lcy12g2053 650116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy12g2053 436 SMART amb_all 162 359 IPR002022 -
Lcy12g2053 436 SUPERFAMILY Pectin lyase-like 65 431 IPR011050 -
Lcy12g2053 436 FunFam Pectate lyase 87 429 - -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Lcy12g2053 436 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Lcy12g2053 436 Pfam Pectate lyase 182 351 IPR002022 -
Lcy12g2053 436 Gene3D - 87 429 IPR012334 -
Lcy12g2053 436 PANTHER PECTATE LYASE 18-RELATED 27 433 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2053 Lcy-Chr12:41846793 Lcy5g2168 Lcy-Chr5:44640219 4.69E-212 dispersed
Lcy10g1880 Lcy-Chr10:42959838 Lcy12g2053 Lcy-Chr12:41846793 4.77E-213 transposed
Lcy13g1730 Lcy-Chr13:36269656 Lcy12g2053 Lcy-Chr12:41846793 4.65E-215 transposed
Lcy11g1745 Lcy-Chr11:41250075 Lcy12g2053 Lcy-Chr12:41846793 6.47E-253 wgd
Lcy12g2053 Lcy-Chr12:41846793 Lcy13g0445 Lcy-Chr13:5232370 1.34E-250 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy12g2053 K01728 - csv:101207204 826.239